Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2026c

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2025c and Rv2026c are separated by 114 nucleotidesRv2026c and Rv2027c are separated by 39 nucleotides Rv2025c: Rv2025c - Conserved membrane protein, at 2,270,750 to 2,271,748 Rv2025c Rv2026c: Rv2026c - Universal stress protein family protein, at 2,271,863 to 2,272,747 Rv2026c Rv2027c: Rv2027c - Two component sensor histidine kinase DosT, at 2,272,787 to 2,274,508 Rv2027c Position (kb) 2271 2272 2273Strain fitness (log2 ratio) -1 0 1 2at 2271.442 kb on + strand, within Rv2025cat 2271.443 kb on - strand, within Rv2025cat 2271.443 kb on - strand, within Rv2025cat 2271.444 kb on + strand, within Rv2025cat 2271.444 kb on + strand, within Rv2025cat 2271.622 kb on + strand, within Rv2025cat 2271.622 kb on + strand, within Rv2025cat 2271.864 kb on + strandat 2271.864 kb on + strandat 2271.864 kb on + strandat 2271.865 kb on - strandat 2271.865 kb on - strandat 2271.865 kb on - strandat 2272.060 kb on - strand, within Rv2026cat 2272.298 kb on - strand, within Rv2026cat 2273.241 kb on + strand, within Rv2027cat 2273.241 kb on + strand, within Rv2027cat 2273.242 kb on - strand, within Rv2027cat 2273.242 kb on - strand, within Rv2027cat 2273.449 kb on + strand, within Rv2027cat 2273.450 kb on - strand, within Rv2027cat 2273.608 kb on + strand, within Rv2027cat 2273.609 kb on - strand, within Rv2027cat 2273.697 kb on - strand, within Rv2027cat 2273.697 kb on - strand, within Rv2027cat 2273.697 kb on - strand, within Rv2027c

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,271,442 + Rv2025c 0.69 -0.6
2,271,443 - Rv2025c 0.69 +0.5
2,271,443 - Rv2025c 0.69 +1.8
2,271,444 + Rv2025c 0.69 +0.1
2,271,444 + Rv2025c 0.69 +1.9
2,271,622 + Rv2025c 0.87 -0.6
2,271,622 + Rv2025c 0.87 +0.6
2,271,864 + -0.8
2,271,864 + -0.1
2,271,864 + +0.2
2,271,865 - -0.8
2,271,865 - -0.7
2,271,865 - -0.2
2,272,060 - Rv2026c 0.22 -0.5
2,272,298 - Rv2026c 0.49 -0.7
2,273,241 + Rv2027c 0.26 +0.4
2,273,241 + Rv2027c 0.26 -0.3
2,273,242 - Rv2027c 0.26 -0.8
2,273,242 - Rv2027c 0.26 -0.9
2,273,449 + Rv2027c 0.38 -0.8
2,273,450 - Rv2027c 0.39 +0.1
2,273,608 + Rv2027c 0.48 -0.0
2,273,609 - Rv2027c 0.48 -0.5
2,273,697 - Rv2027c 0.53 -0.4
2,273,697 - Rv2027c 0.53 -0.6
2,273,697 - Rv2027c 0.53 -0.3

Or see this region's nucleotide sequence