Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3209

Experiment: 7H9 with Ofloxacin 0.8 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ofloxacin 0.8 ug/mL
3,585,688	+				+0.9
3,585,688	+				+0.0
3,585,798	-		Rv3208A	0.44	+0.6
3,585,875	+		Rv3208A	0.73	-0.4
3,585,875	+		Rv3208A	0.73	+1.5
3,585,998	+				+0.1
3,586,002	-				-0.9
3,586,028	-				-0.4
3,586,034	-				-0.5
3,586,111	+				-1.1
3,586,121	+				-1.0
3,586,122	-				+0.8
3,586,306	+				-2.2
3,586,307	-				+0.2
3,586,321	+				+1.3
3,586,321	+				-1.6
3,586,322	-				-2.0
3,586,322	-				+0.7
3,586,371	+		Rv3209	0.17	-1.2
3,586,495	+		Rv3209	0.39	-0.7
3,586,495	+		Rv3209	0.39	-1.1
3,586,496	-		Rv3209	0.40	-5.3
3,586,742	+		Rv3209	0.83	-0.6
3,586,833	-				-0.4
3,586,845	+				-0.5
3,586,846	-				-0.3
3,587,550	+				+0.4
3,587,550	+				-0.2
3,587,554	-				+0.3
3,587,597	-				+0.8
3,587,597	-				-0.8