Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2556c

Experiment: 7H9 with Ofloxacin 0.8 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ofloxacin 0.8 ug/mL
2,876,512	-				+2.0
2,876,541	-				-0.1
2,876,541	-				-0.2
2,876,743	-		Rv2556c	0.43	-1.5
2,876,837	-		Rv2556c	0.67	-0.3
2,876,989	+				+0.8
2,876,990	-				-0.3
2,877,067	-				+0.0
2,877,147	-		Rv2557	0.11	-0.5
2,877,147	-		Rv2557	0.11	-1.3
2,877,204	-		Rv2557	0.20	+2.3
2,877,242	-		Rv2557	0.25	+0.6
2,877,332	-		Rv2557	0.39	+1.0
2,877,478	+		Rv2557	0.60	-1.0
2,877,478	+		Rv2557	0.60	-0.3
2,877,479	-		Rv2557	0.60	-0.3
2,877,496	-		Rv2557	0.63	-2.0
2,877,496	-		Rv2557	0.63	-0.8
2,877,496	-		Rv2557	0.63	+3.3
2,877,498	+		Rv2557	0.63	-2.5
2,877,498	+		Rv2557	0.63	-0.0
2,877,498	+		Rv2557	0.63	+0.2
2,877,498	+		Rv2557	0.63	-1.1
2,877,499	-		Rv2557	0.63	-2.0
2,877,724	+				-0.0
2,877,724	+				-0.7
2,877,724	+				+2.6
2,877,725	-				-0.6
2,877,765	+				-1.1
2,877,766	-				+0.2
2,877,825	+				+0.5
2,877,859	+				+0.0
2,877,859	+				-0.1
2,877,860	-				-0.2
2,877,860	-				+2.5