Experiment: 7H9 with Ofloxacin 0.8 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2551c and Rv2552c are separated by 11 nucleotides Rv2552c and Rv2553c overlap by 4 nucleotides Rv2553c and Rv2554c overlap by 8 nucleotides Rv2554c and Rv2555c are separated by 0 nucleotides
Rv2551c: Rv2551c - Conserved hypothetical protein, at 2,870,775 to 2,871,194
Rv2551c
Rv2552c: Rv2552c - Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase), at 2,871,206 to 2,872,015
Rv2552c
Rv2553c: Rv2553c - Probable conserved membrane protein, at 2,872,012 to 2,873,265
Rv2553c
Rv2554c: Rv2554c - Conserved protein, at 2,873,258 to 2,873,770
Rv2554c
Rv2555c: Rv2555c - Probable alanyl-tRNA synthetase AlaS (alanine--tRNA ligase) (alanine translase) (ALARS), at 2,873,771 to 2,876,485
Rv2555c
Position (kb)
2872
2873
2874 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2871.019 kb on + strand, within Rv2551c at 2871.020 kb on - strand, within Rv2551c at 2871.208 kb on - strand at 2871.208 kb on - strand at 2872.125 kb on - strand at 2872.416 kb on - strand, within Rv2553c at 2872.875 kb on - strand, within Rv2553c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ofloxacin 0.8 ug/mL remove 2,871,019 + Rv2551c 0.58 -0.9 2,871,020 - Rv2551c 0.58 -1.9 2,871,208 - -1.4 2,871,208 - -0.0 2,872,125 - -0.4 2,872,416 - Rv2553c 0.32 +2.1 2,872,875 - Rv2553c 0.69 +0.2
Or see this region's nucleotide sequence