Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1863c

Experiment: 7H9 with Ofloxacin 0.8 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ofloxacin 0.8 ug/mL
2,109,767	+		Rv1862	0.21	-0.2
2,109,768	-		Rv1862	0.22	-1.2
2,109,768	-		Rv1862	0.22	+0.9
2,109,883	+		Rv1862	0.33	-0.9
2,110,079	+		Rv1862	0.51	-0.6
2,110,079	+		Rv1862	0.51	+0.6
2,110,080	-		Rv1862	0.51	-1.1
2,110,166	+		Rv1862	0.60	+1.3
2,110,166	+		Rv1862	0.60	-0.4
2,110,166	+		Rv1862	0.60	-0.1
2,110,277	+		Rv1862	0.70	+0.2
2,110,277	+		Rv1862	0.70	-0.0
2,110,277	+		Rv1862	0.70	-0.0
2,110,278	-		Rv1862	0.71	+1.1
2,110,278	-		Rv1862	0.71	-2.2
2,110,369	-		Rv1862	0.79	-0.5
2,110,369	-		Rv1862	0.79	-1.2
2,110,384	+		Rv1862	0.81	-1.1
2,110,384	+		Rv1862	0.81	+0.5
2,110,385	-		Rv1862	0.81	-0.9
2,110,385	-		Rv1862	0.81	-0.2
2,110,831	-		Rv1863c	0.31	-0.4
2,110,831	-		Rv1863c	0.31	-0.5
2,110,831	-		Rv1863c	0.31	+0.1
2,110,831	-		Rv1863c	0.31	-1.0
2,110,998	-		Rv1863c	0.53	+0.3
2,111,045	-		Rv1863c	0.59	-0.6
2,111,276	+		Rv1863c	0.89	-0.5
2,111,276	+		Rv1863c	0.89	-1.4
2,111,276	+		Rv1863c	0.89	+0.3
2,111,277	-		Rv1863c	0.89	-0.5
2,111,277	-		Rv1863c	0.89	-0.9
2,111,277	-		Rv1863c	0.89	-0.2
2,111,277	-		Rv1863c	0.89	-0.6
2,111,277	-		Rv1863c	0.89	-0.5
2,111,277	-		Rv1863c	0.89	+0.1
2,111,277	-		Rv1863c	0.89	-2.0
2,111,278	+		Rv1863c	0.89	-0.8
2,111,278	+		Rv1863c	0.89	-0.3
2,111,278	+		Rv1863c	0.89	-0.8
2,111,279	-		Rv1863c	0.89	-1.0
2,111,376	-				+0.5
2,111,409	+				-1.5
2,111,523	+		Rv1864c	0.22	-0.2
2,111,577	-		Rv1864c	0.29	-0.4
2,111,581	-		Rv1864c	0.30	+0.2
2,111,730	+		Rv1864c	0.50	-0.2
2,111,731	-		Rv1864c	0.50	-0.3
2,111,731	-		Rv1864c	0.50	-3.0
2,111,731	-		Rv1864c	0.50	+1.4
2,111,832	+		Rv1864c	0.63	-1.9
2,111,833	-		Rv1864c	0.63	+1.5
2,111,838	+		Rv1864c	0.64	+0.1
2,111,838	+		Rv1864c	0.64	+0.6
2,111,839	-		Rv1864c	0.64	+0.5
2,112,060	+				-0.3
2,112,060	+				-0.5
2,112,061	-				-0.2
2,112,134	+				+0.5
2,112,135	-				-0.5
2,112,135	-				-2.7
2,112,135	-				+0.6