Experiment: 7H9 with Ofloxacin 0.8 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0803 and Rv0804 overlap by 4 nucleotides Rv0804 and Rv0805 are separated by 120 nucleotides Rv0805 and Rv0806c overlap by 56 nucleotides
Rv0803: Rv0803 - Phosphoribosylformylglycinamidine synthase II PurL (FGAM synthase II), at 895,820 to 898,084
Rv0803
Rv0804: Rv0804 - Conserved hypothetical protein, at 898,081 to 898,710
Rv0804
Rv0805: Rv0805 - Class III cyclic nucleotide phosphodiesterase (cNMP PDE), at 898,831 to 899,787
Rv0805
Rv0806c: Rv0806c - Possible UDP-glucose-4-epimerase CpsY (galactowaldenase) (UDP-galactose-4-epimerase) (uridine diphosphate galactose-4-epimerase) (uridine diphospho-galactose-4-epimerase), at 899,732 to 901,330
Rv0806c
Position (kb) 898
899
900 Strain fitness (log2 ratio) -2
-1
0
1
2 at 898.376 kb on + strand, within Rv0804 at 898.376 kb on + strand, within Rv0804 at 898.386 kb on + strand, within Rv0804 at 898.386 kb on - strand, within Rv0804 at 898.386 kb on - strand, within Rv0804 at 898.386 kb on - strand, within Rv0804 at 898.440 kb on + strand, within Rv0804 at 898.479 kb on - strand, within Rv0804 at 898.479 kb on - strand, within Rv0804 at 898.780 kb on - strand at 898.799 kb on + strand at 898.837 kb on - strand at 898.837 kb on - strand at 898.843 kb on - strand at 898.870 kb on + strand at 898.880 kb on + strand at 898.880 kb on + strand at 898.880 kb on + strand at 898.880 kb on + strand at 898.881 kb on - strand at 898.884 kb on + strand at 898.884 kb on + strand at 898.884 kb on + strand at 898.885 kb on - strand at 899.028 kb on + strand, within Rv0805 at 899.119 kb on - strand, within Rv0805 at 899.891 kb on - strand at 899.891 kb on - strand at 899.938 kb on + strand, within Rv0806c at 899.962 kb on - strand, within Rv0806c at 899.980 kb on - strand, within Rv0806c at 899.990 kb on - strand, within Rv0806c at 900.030 kb on + strand, within Rv0806c at 900.033 kb on + strand, within Rv0806c at 900.039 kb on + strand, within Rv0806c at 900.040 kb on - strand, within Rv0806c at 900.040 kb on - strand, within Rv0806c at 900.181 kb on + strand, within Rv0806c at 900.328 kb on + strand, within Rv0806c at 900.434 kb on - strand, within Rv0806c at 900.434 kb on - strand, within Rv0806c at 900.435 kb on + strand, within Rv0806c at 900.436 kb on - strand, within Rv0806c at 900.436 kb on - strand, within Rv0806c at 900.436 kb on - strand, within Rv0806c at 900.552 kb on - strand, within Rv0806c at 900.648 kb on + strand, within Rv0806c at 900.723 kb on - strand, within Rv0806c at 900.784 kb on - strand, within Rv0806c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ofloxacin 0.8 ug/mL remove 898,376 + Rv0804 0.47 +2.4 898,376 + Rv0804 0.47 +1.0 898,386 + Rv0804 0.48 -0.1 898,386 - Rv0804 0.48 +0.1 898,386 - Rv0804 0.48 +0.1 898,386 - Rv0804 0.48 +0.5 898,440 + Rv0804 0.57 +0.2 898,479 - Rv0804 0.63 -0.0 898,479 - Rv0804 0.63 -0.7 898,780 - -2.2 898,799 + +0.1 898,837 - -0.1 898,837 - -0.2 898,843 - -0.7 898,870 + -0.0 898,880 + -0.2 898,880 + -0.5 898,880 + -0.6 898,880 + -0.0 898,881 - -0.2 898,884 + -1.4 898,884 + -1.2 898,884 + +0.8 898,885 - +0.4 899,028 + Rv0805 0.21 -1.2 899,119 - Rv0805 0.30 -1.6 899,891 - -0.8 899,891 - -0.2 899,938 + Rv0806c 0.13 +0.2 899,962 - Rv0806c 0.14 -1.2 899,980 - Rv0806c 0.16 -1.0 899,990 - Rv0806c 0.16 +1.1 900,030 + Rv0806c 0.19 +0.1 900,033 + Rv0806c 0.19 +2.0 900,039 + Rv0806c 0.19 +0.2 900,040 - Rv0806c 0.19 -0.1 900,040 - Rv0806c 0.19 -1.2 900,181 + Rv0806c 0.28 +0.6 900,328 + Rv0806c 0.37 -1.2 900,434 - Rv0806c 0.44 +0.4 900,434 - Rv0806c 0.44 +1.5 900,435 + Rv0806c 0.44 -0.4 900,436 - Rv0806c 0.44 -0.2 900,436 - Rv0806c 0.44 +0.4 900,436 - Rv0806c 0.44 -0.3 900,552 - Rv0806c 0.51 -1.7 900,648 + Rv0806c 0.57 +0.4 900,723 - Rv0806c 0.62 +0.2 900,784 - Rv0806c 0.66 -0.2
Or see this region's nucleotide sequence