Experiment: 7H9 with Ofloxacin 0.8 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0693 and Rv0694 are separated by 2 nucleotides Rv0694 and Rv0695 are separated by 189 nucleotides Rv0695 and Rv0696 are separated by 48 nucleotides
Rv0693: Rv0693 - Probable coenzyme PQQ synthesis protein E PqqE (coenzyme PQQ synthesis protein III), at 792,157 to 793,332
Rv0693
Rv0694: Rv0694 - Possible L-lactate dehydrogenase (cytochrome) LldD1, at 793,335 to 794,525
Rv0694
Rv0695: Rv0695 - Conserved hypothetical protein, at 794,715 to 795,470
Rv0695
Rv0696: Rv0696 - Probable membrane sugar transferase, at 795,519 to 796,931
Rv0696
Position (kb) 793
794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 792.358 kb on + strand, within Rv0693 at 792.419 kb on - strand, within Rv0693 at 792.761 kb on + strand, within Rv0693 at 792.955 kb on + strand, within Rv0693 at 793.103 kb on - strand, within Rv0693 at 793.955 kb on - strand, within Rv0694 at 793.955 kb on - strand, within Rv0694 at 794.337 kb on + strand, within Rv0694 at 794.337 kb on + strand, within Rv0694 at 794.338 kb on - strand, within Rv0694 at 794.338 kb on - strand, within Rv0694 at 794.696 kb on - strand at 794.783 kb on - strand at 794.852 kb on - strand, within Rv0695 at 794.852 kb on - strand, within Rv0695 at 795.130 kb on + strand, within Rv0695
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ofloxacin 0.8 ug/mL remove 792,358 + Rv0693 0.17 +0.5 792,419 - Rv0693 0.22 +0.1 792,761 + Rv0693 0.51 -3.1 792,955 + Rv0693 0.68 +0.1 793,103 - Rv0693 0.80 -1.5 793,955 - Rv0694 0.52 -0.5 793,955 - Rv0694 0.52 -1.0 794,337 + Rv0694 0.84 -0.8 794,337 + Rv0694 0.84 -1.9 794,338 - Rv0694 0.84 -0.1 794,338 - Rv0694 0.84 +0.2 794,696 - +1.1 794,783 - -2.2 794,852 - Rv0695 0.18 -1.2 794,852 - Rv0695 0.18 -0.4 795,130 + Rv0695 0.55 -0.6
Or see this region's nucleotide sequence