Experiment: 7H9 with Ofloxacin 0.8 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0628c and Rv0629c are separated by 92 nucleotides Rv0629c and Rv0630c overlap by 4 nucleotides
Rv0628c: Rv0628c - Conserved hypothetical protein, at 718,761 to 719,912
Rv0628c
Rv0629c: Rv0629c - Probable exonuclease V (alpha chain) RecD (exodeoxyribonuclease V alpha chain) (exodeoxyribonuclease V polypeptide), at 720,005 to 721,732
Rv0629c
Rv0630c: Rv0630c - Probable exonuclease V (beta chain) RecB (exodeoxyribonuclease V beta chain)(exodeoxyribonuclease V polypeptide) (chi-specific endonuclease), at 721,729 to 725,013
Rv0630c
Position (kb) 720
721
722 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 719.305 kb on + strand, within Rv0628c at 719.305 kb on + strand, within Rv0628c at 719.305 kb on + strand, within Rv0628c at 719.306 kb on - strand, within Rv0628c at 719.306 kb on - strand, within Rv0628c at 719.306 kb on - strand, within Rv0628c at 719.522 kb on - strand, within Rv0628c at 719.948 kb on - strand at 720.354 kb on + strand, within Rv0629c at 720.355 kb on - strand, within Rv0629c at 720.376 kb on - strand, within Rv0629c at 721.713 kb on + strand at 721.868 kb on + strand at 722.045 kb on + strand at 722.160 kb on - strand, within Rv0630c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ofloxacin 0.8 ug/mL remove 719,305 + Rv0628c 0.47 -0.3 719,305 + Rv0628c 0.47 +0.5 719,305 + Rv0628c 0.47 -0.9 719,306 - Rv0628c 0.47 +0.0 719,306 - Rv0628c 0.47 +0.8 719,306 - Rv0628c 0.47 -0.7 719,522 - Rv0628c 0.66 -0.4 719,948 - -0.6 720,354 + Rv0629c 0.20 -0.4 720,355 - Rv0629c 0.20 -1.2 720,376 - Rv0629c 0.21 -1.6 721,713 + +3.8 721,868 + +0.7 722,045 + -0.2 722,160 - Rv0630c 0.13 +0.7
Or see this region's nucleotide sequence