Experiment: 7H9 with Ofloxacin 0.8 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0423c and Rv0424c are separated by 151 nucleotides Rv0424c and Rv0425c are separated by 49 nucleotides Rv0425c and Rv0426c are separated by 51 nucleotides Rv0426c and Rv0427c are separated by 200 nucleotides
Rv0423c: Rv0423c - Probable thiamine biosynthesis protein ThiC, at 508,582 to 510,225
Rv0423c
Rv0424c: Rv0424c - Hypothetical protein, at 510,377 to 510,652
Rv0424c
Rv0425c: Rv0425c - Possible metal cation transporting P-type ATPase CtpH, at 510,702 to 515,321
Rv0425c
Rv0426c: Rv0426c - Possible transmembrane protein, at 515,373 to 515,816
Rv0426c
Rv0427c: Rv0427c - Probable exodeoxyribonuclease III protein XthA (exonuclease III) (EXO III) (AP endonuclease VI), at 516,017 to 516,892
Rv0427c
Position (kb) 510
511
512
513
514
515
516 Strain fitness (log2 ratio) -2
-1
0
1 at 510.238 kb on - strand at 510.430 kb on + strand, within Rv0424c at 510.430 kb on + strand, within Rv0424c at 510.442 kb on + strand, within Rv0424c at 510.442 kb on + strand, within Rv0424c at 510.442 kb on + strand, within Rv0424c at 510.516 kb on + strand, within Rv0424c at 510.516 kb on + strand, within Rv0424c at 510.516 kb on + strand, within Rv0424c at 510.516 kb on + strand, within Rv0424c at 510.517 kb on - strand, within Rv0424c at 510.517 kb on - strand, within Rv0424c at 510.517 kb on - strand, within Rv0424c at 510.519 kb on + strand, within Rv0424c at 510.519 kb on + strand, within Rv0424c at 510.520 kb on - strand, within Rv0424c at 510.548 kb on - strand, within Rv0424c at 510.580 kb on + strand, within Rv0424c at 510.580 kb on + strand, within Rv0424c at 510.638 kb on - strand at 510.638 kb on - strand at 510.715 kb on + strand at 510.798 kb on - strand at 510.798 kb on - strand at 511.397 kb on + strand, within Rv0425c at 511.686 kb on + strand, within Rv0425c at 511.687 kb on - strand, within Rv0425c at 512.502 kb on + strand, within Rv0425c at 512.604 kb on + strand, within Rv0425c at 512.822 kb on - strand, within Rv0425c at 513.026 kb on - strand, within Rv0425c at 513.225 kb on - strand, within Rv0425c at 513.225 kb on - strand, within Rv0425c at 513.701 kb on - strand, within Rv0425c at 513.773 kb on + strand, within Rv0425c at 515.204 kb on + strand at 515.375 kb on - strand at 515.550 kb on + strand, within Rv0426c at 515.660 kb on + strand, within Rv0426c at 515.660 kb on + strand, within Rv0426c at 515.661 kb on - strand, within Rv0426c at 515.847 kb on + strand at 516.199 kb on - strand, within Rv0427c at 516.230 kb on + strand, within Rv0427c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ofloxacin 0.8 ug/mL remove 510,238 - -0.2 510,430 + Rv0424c 0.19 -1.2 510,430 + Rv0424c 0.19 +0.3 510,442 + Rv0424c 0.24 -0.2 510,442 + Rv0424c 0.24 +0.7 510,442 + Rv0424c 0.24 -1.0 510,516 + Rv0424c 0.50 -0.3 510,516 + Rv0424c 0.50 -0.8 510,516 + Rv0424c 0.50 +0.4 510,516 + Rv0424c 0.50 -0.6 510,517 - Rv0424c 0.51 -1.9 510,517 - Rv0424c 0.51 -0.4 510,517 - Rv0424c 0.51 +0.3 510,519 + Rv0424c 0.51 +0.1 510,519 + Rv0424c 0.51 +0.9 510,520 - Rv0424c 0.52 +0.2 510,548 - Rv0424c 0.62 -0.0 510,580 + Rv0424c 0.74 -0.8 510,580 + Rv0424c 0.74 -0.1 510,638 - +0.3 510,638 - -0.6 510,715 + -0.7 510,798 - +1.7 510,798 - +0.6 511,397 + Rv0425c 0.15 +0.7 511,686 + Rv0425c 0.21 +0.2 511,687 - Rv0425c 0.21 -0.4 512,502 + Rv0425c 0.39 +0.0 512,604 + Rv0425c 0.41 -1.8 512,822 - Rv0425c 0.46 +1.2 513,026 - Rv0425c 0.50 -1.2 513,225 - Rv0425c 0.55 -0.5 513,225 - Rv0425c 0.55 -0.3 513,701 - Rv0425c 0.65 -0.4 513,773 + Rv0425c 0.66 -0.3 515,204 + -0.0 515,375 - -0.0 515,550 + Rv0426c 0.40 +0.3 515,660 + Rv0426c 0.65 -2.1 515,660 + Rv0426c 0.65 -1.9 515,661 - Rv0426c 0.65 -2.0 515,847 + -1.3 516,199 - Rv0427c 0.21 +0.7 516,230 + Rv0427c 0.24 +0.8
Or see this region's nucleotide sequence