Experiment: 7H9 with Ofloxacin 0.8 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0365c and Rv0366c are separated by 24 nucleotides Rv0366c and Rv0367c are separated by 28 nucleotides Rv0367c and Rv0368c are separated by 80 nucleotides
Rv0365c: Rv0365c - Conserved protein, at 443,067 to 444,197
Rv0365c
Rv0366c: Rv0366c - Conserved hypothetical protein, at 444,222 to 444,815
Rv0366c
Rv0367c: Rv0367c - Hypothetical protein, at 444,844 to 445,233
Rv0367c
Rv0368c: Rv0368c - Conserved hypothetical protein, at 445,314 to 446,525
Rv0368c
Position (kb) 444
445
446 Strain fitness (log2 ratio) -2
-1
0
1
2 at 443.857 kb on - strand, within Rv0365c at 443.915 kb on - strand, within Rv0365c at 443.915 kb on - strand, within Rv0365c at 443.917 kb on + strand, within Rv0365c at 443.918 kb on - strand, within Rv0365c at 443.918 kb on - strand, within Rv0365c at 443.918 kb on - strand, within Rv0365c at 443.918 kb on - strand, within Rv0365c at 444.052 kb on + strand, within Rv0365c at 444.223 kb on + strand at 444.224 kb on - strand at 444.224 kb on - strand at 444.243 kb on - strand at 444.522 kb on + strand, within Rv0366c at 444.522 kb on + strand, within Rv0366c at 444.522 kb on + strand, within Rv0366c at 444.661 kb on + strand, within Rv0366c at 444.661 kb on + strand, within Rv0366c at 444.661 kb on + strand, within Rv0366c at 444.985 kb on - strand, within Rv0367c at 445.263 kb on + strand at 445.391 kb on - strand at 445.566 kb on + strand, within Rv0368c at 445.622 kb on + strand, within Rv0368c at 445.646 kb on + strand, within Rv0368c at 445.647 kb on - strand, within Rv0368c at 445.662 kb on + strand, within Rv0368c at 445.662 kb on + strand, within Rv0368c at 445.663 kb on - strand, within Rv0368c at 445.663 kb on - strand, within Rv0368c at 445.663 kb on - strand, within Rv0368c at 445.663 kb on - strand, within Rv0368c at 445.663 kb on - strand, within Rv0368c at 445.663 kb on - strand, within Rv0368c at 445.663 kb on - strand, within Rv0368c at 445.700 kb on + strand, within Rv0368c at 445.701 kb on - strand, within Rv0368c at 445.786 kb on + strand, within Rv0368c at 445.786 kb on + strand, within Rv0368c at 445.786 kb on + strand, within Rv0368c at 445.787 kb on - strand, within Rv0368c at 445.787 kb on - strand, within Rv0368c at 445.787 kb on - strand, within Rv0368c at 445.798 kb on + strand, within Rv0368c at 445.798 kb on + strand, within Rv0368c at 446.147 kb on + strand, within Rv0368c at 446.147 kb on + strand, within Rv0368c at 446.148 kb on - strand, within Rv0368c at 446.148 kb on - strand, within Rv0368c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ofloxacin 0.8 ug/mL remove 443,857 - Rv0365c 0.70 +1.4 443,915 - Rv0365c 0.75 -0.3 443,915 - Rv0365c 0.75 -0.7 443,917 + Rv0365c 0.75 +0.2 443,918 - Rv0365c 0.75 +0.1 443,918 - Rv0365c 0.75 +0.5 443,918 - Rv0365c 0.75 -0.7 443,918 - Rv0365c 0.75 -0.8 444,052 + Rv0365c 0.87 -0.2 444,223 + +0.3 444,224 - +0.7 444,224 - -0.9 444,243 - -0.5 444,522 + Rv0366c 0.51 +1.3 444,522 + Rv0366c 0.51 +1.6 444,522 + Rv0366c 0.51 -0.0 444,661 + Rv0366c 0.74 +0.0 444,661 + Rv0366c 0.74 -0.0 444,661 + Rv0366c 0.74 -0.1 444,985 - Rv0367c 0.36 -0.8 445,263 + +0.0 445,391 - -2.1 445,566 + Rv0368c 0.21 +0.5 445,622 + Rv0368c 0.25 +0.2 445,646 + Rv0368c 0.27 -0.4 445,647 - Rv0368c 0.27 -0.3 445,662 + Rv0368c 0.29 +0.9 445,662 + Rv0368c 0.29 -0.2 445,663 - Rv0368c 0.29 -1.1 445,663 - Rv0368c 0.29 -2.3 445,663 - Rv0368c 0.29 +0.2 445,663 - Rv0368c 0.29 -0.9 445,663 - Rv0368c 0.29 -2.4 445,663 - Rv0368c 0.29 -0.5 445,663 - Rv0368c 0.29 -0.8 445,700 + Rv0368c 0.32 -0.2 445,701 - Rv0368c 0.32 +0.4 445,786 + Rv0368c 0.39 +0.5 445,786 + Rv0368c 0.39 +0.2 445,786 + Rv0368c 0.39 -0.0 445,787 - Rv0368c 0.39 -1.8 445,787 - Rv0368c 0.39 -0.7 445,787 - Rv0368c 0.39 +1.8 445,798 + Rv0368c 0.40 -0.6 445,798 + Rv0368c 0.40 -1.6 446,147 + Rv0368c 0.69 -0.5 446,147 + Rv0368c 0.69 +1.4 446,148 - Rv0368c 0.69 -0.1 446,148 - Rv0368c 0.69 +0.9
Or see this region's nucleotide sequence