Experiment: 7H9 with Ofloxacin 0.8 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0207c and Rv0208c are separated by 2 nucleotides Rv0208c and Rv0209 are separated by 131 nucleotides Rv0209 and Rv0210 overlap by 4 nucleotides
Rv0207c: Rv0207c - Conserved hypothetical protein, at 247,384 to 248,112
Rv0207c
Rv0208c: Rv0208c - Hypothetical methlytransferase (methylase), at 248,115 to 248,906
Rv0208c
Rv0209: Rv0209 - Hypothetical protein, at 249,038 to 250,123
Rv0209
Rv0210: Rv0210 - Hypothetical protein, at 250,120 to 251,598
Rv0210
Position (kb) 249
250
251 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 248.053 kb on + strand at 248.120 kb on + strand at 248.206 kb on + strand, within Rv0208c at 248.206 kb on + strand, within Rv0208c at 248.311 kb on + strand, within Rv0208c at 248.392 kb on - strand, within Rv0208c at 248.581 kb on + strand, within Rv0208c at 248.734 kb on - strand, within Rv0208c at 248.862 kb on + strand at 248.863 kb on - strand at 249.282 kb on - strand, within Rv0209 at 249.436 kb on + strand, within Rv0209 at 249.437 kb on - strand, within Rv0209 at 249.437 kb on - strand, within Rv0209 at 249.619 kb on - strand, within Rv0209 at 249.924 kb on + strand, within Rv0209 at 249.925 kb on - strand, within Rv0209 at 249.925 kb on - strand, within Rv0209 at 250.004 kb on + strand, within Rv0209 at 250.005 kb on - strand, within Rv0209 at 250.303 kb on - strand, within Rv0210 at 250.303 kb on - strand, within Rv0210 at 250.440 kb on - strand, within Rv0210 at 250.488 kb on + strand, within Rv0210 at 250.488 kb on + strand, within Rv0210 at 250.489 kb on - strand, within Rv0210 at 250.489 kb on - strand, within Rv0210 at 250.846 kb on + strand, within Rv0210
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ofloxacin 0.8 ug/mL remove 248,053 + -2.3 248,120 + -1.4 248,206 + Rv0208c 0.11 +1.0 248,206 + Rv0208c 0.11 +0.0 248,311 + Rv0208c 0.25 +1.0 248,392 - Rv0208c 0.35 +0.9 248,581 + Rv0208c 0.59 -3.4 248,734 - Rv0208c 0.78 +0.9 248,862 + +0.2 248,863 - -1.6 249,282 - Rv0209 0.22 -0.5 249,436 + Rv0209 0.37 +0.4 249,437 - Rv0209 0.37 -1.7 249,437 - Rv0209 0.37 +0.0 249,619 - Rv0209 0.53 -0.8 249,924 + Rv0209 0.82 -0.7 249,925 - Rv0209 0.82 -0.2 249,925 - Rv0209 0.82 +0.4 250,004 + Rv0209 0.89 -0.5 250,005 - Rv0209 0.89 -3.8 250,303 - Rv0210 0.12 -0.5 250,303 - Rv0210 0.12 -0.5 250,440 - Rv0210 0.22 +0.5 250,488 + Rv0210 0.25 +0.5 250,488 + Rv0210 0.25 -0.0 250,489 - Rv0210 0.25 +0.4 250,489 - Rv0210 0.25 -1.5 250,846 + Rv0210 0.49 +0.2
Or see this region's nucleotide sequence