Experiment: 7H9 with Ofloxacin 0.8 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0079 and Rv0080 overlap by 4 nucleotides Rv0080 and Rv0081 are separated by 94 nucleotides Rv0081 and Rv0082 are separated by 4 nucleotides Rv0082 and Rv0083 overlap by 4 nucleotides
Rv0079: Rv0079 - Unknown protein, at 88,204 to 89,025
Rv0079
Rv0080: Rv0080 - Conserved hypothetical protein, at 89,022 to 89,480
Rv0080
Rv0081: Rv0081 - Probable transcriptional regulatory protein, at 89,575 to 89,919
Rv0081
Rv0082: Rv0082 - Probable oxidoreductase, at 89,924 to 90,403
Rv0082
Rv0083: Rv0083 - Probable oxidoreductase, at 90,400 to 92,322
Rv0083
Position (kb) 89
90 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 88.233 kb on - strand at 88.233 kb on - strand at 88.280 kb on + strand at 88.440 kb on - strand, within Rv0079 at 88.631 kb on + strand, within Rv0079 at 88.681 kb on + strand, within Rv0079 at 88.682 kb on - strand, within Rv0079 at 88.732 kb on + strand, within Rv0079 at 88.779 kb on - strand, within Rv0079 at 88.779 kb on - strand, within Rv0079 at 88.954 kb on + strand at 88.954 kb on + strand at 89.271 kb on + strand, within Rv0080 at 89.271 kb on + strand, within Rv0080 at 89.272 kb on - strand, within Rv0080 at 89.370 kb on + strand, within Rv0080 at 89.371 kb on - strand, within Rv0080 at 89.471 kb on + strand at 89.472 kb on - strand at 89.593 kb on + strand at 89.594 kb on - strand at 89.747 kb on + strand, within Rv0081 at 89.917 kb on + strand at 90.015 kb on + strand, within Rv0082 at 90.101 kb on + strand, within Rv0082 at 90.290 kb on + strand, within Rv0082 at 90.322 kb on - strand, within Rv0082
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ofloxacin 0.8 ug/mL remove 88,233 - +0.5 88,233 - -0.5 88,280 + -2.8 88,440 - Rv0079 0.29 -0.1 88,631 + Rv0079 0.52 -0.6 88,681 + Rv0079 0.58 -4.1 88,682 - Rv0079 0.58 -0.0 88,732 + Rv0079 0.64 +0.1 88,779 - Rv0079 0.70 -1.2 88,779 - Rv0079 0.70 -3.6 88,954 + -0.4 88,954 + -0.5 89,271 + Rv0080 0.54 -1.3 89,271 + Rv0080 0.54 -1.1 89,272 - Rv0080 0.54 +0.9 89,370 + Rv0080 0.76 +0.9 89,371 - Rv0080 0.76 +0.7 89,471 + -0.7 89,472 - -0.0 89,593 + -0.9 89,594 - +0.6 89,747 + Rv0081 0.50 +0.1 89,917 + +1.0 90,015 + Rv0082 0.19 +0.4 90,101 + Rv0082 0.37 -0.3 90,290 + Rv0082 0.76 -0.0 90,322 - Rv0082 0.83 -0.1
Or see this region's nucleotide sequence