Experiment: 7H9 with Ofloxacin 0.8 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0010c and Rv0011c are separated by 155 nucleotides Rv0011c and Rv0012 are separated by 93 nucleotides Rv0012 and Rv0013 are separated by 36 nucleotides Rv0013 and Rv0014c overlap by 23 nucleotides
Rv0010c: Rv0010c - Probable conserved membrane protein, at 13,133 to 13,558
Rv0010c
Rv0011c: Rv0011c - Probable conserved transmembrane protein, at 13,714 to 13,995
Rv0011c
Rv0012: Rv0012 - Probable conserved membrane protein, at 14,089 to 14,877
Rv0012
Rv0013: Rv0013 - Possible anthranilate synthase component II TrpG (glutamine amidotransferase), at 14,914 to 15,612
Rv0013
Rv0014c: Rv0014c - Transmembrane serine/threonine-protein kinase B PknB (protein kinase B) (STPK B), at 15,590 to 17,470
Rv0014c
Position (kb) 14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.156 kb on - strand at 13.309 kb on + strand, within Rv0010c at 13.309 kb on + strand, within Rv0010c at 13.323 kb on - strand, within Rv0010c at 13.323 kb on - strand, within Rv0010c at 13.325 kb on + strand, within Rv0010c at 13.326 kb on - strand, within Rv0010c at 13.326 kb on - strand, within Rv0010c at 13.369 kb on + strand, within Rv0010c at 13.568 kb on - strand at 14.059 kb on + strand at 14.059 kb on + strand at 14.089 kb on - strand at 14.097 kb on - strand at 14.097 kb on - strand at 14.622 kb on - strand, within Rv0012 at 14.661 kb on + strand, within Rv0012 at 14.662 kb on - strand, within Rv0012 at 14.662 kb on - strand, within Rv0012 at 14.665 kb on + strand, within Rv0012 at 14.666 kb on - strand, within Rv0012 at 14.666 kb on - strand, within Rv0012 at 14.666 kb on - strand, within Rv0012 at 14.750 kb on - strand, within Rv0012 at 14.750 kb on - strand, within Rv0012 at 14.758 kb on + strand, within Rv0012 at 14.758 kb on + strand, within Rv0012 at 14.813 kb on + strand at 15.591 kb on + strand at 15.592 kb on - strand at 15.592 kb on - strand at 15.592 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ofloxacin 0.8 ug/mL remove 13,156 - +0.5 13,309 + Rv0010c 0.41 +0.8 13,309 + Rv0010c 0.41 +1.5 13,323 - Rv0010c 0.45 +0.4 13,323 - Rv0010c 0.45 +1.1 13,325 + Rv0010c 0.45 +1.1 13,326 - Rv0010c 0.45 -1.3 13,326 - Rv0010c 0.45 +0.2 13,369 + Rv0010c 0.55 +1.1 13,568 - +0.8 14,059 + +1.1 14,059 + +0.5 14,089 - -0.2 14,097 - -0.2 14,097 - +0.1 14,622 - Rv0012 0.68 -0.3 14,661 + Rv0012 0.72 -0.3 14,662 - Rv0012 0.73 -1.5 14,662 - Rv0012 0.73 -1.0 14,665 + Rv0012 0.73 -1.0 14,666 - Rv0012 0.73 -0.6 14,666 - Rv0012 0.73 -1.3 14,666 - Rv0012 0.73 -2.7 14,750 - Rv0012 0.84 -0.8 14,750 - Rv0012 0.84 -0.8 14,758 + Rv0012 0.85 -1.5 14,758 + Rv0012 0.85 -1.8 14,813 + -0.8 15,591 + -0.2 15,592 - +0.3 15,592 - +0.7 15,592 - +1.9
Or see this region's nucleotide sequence