Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1439c

Experiment: 7H9 with Ofloxacin 0.8 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ofloxacin 0.8 ug/mL
1,616,366	+				+0.1
1,616,366	+				-0.4
1,616,374	+				+1.0
1,616,374	+				-0.6
1,616,387	-				-0.3
1,616,802	+				-0.4
1,616,803	-				-0.2
1,616,866	-				+0.4
1,616,886	+				-0.5
1,616,887	-				+1.1
1,617,018	+		Rv1439c	0.13	-0.0
1,617,064	-		Rv1439c	0.24	+1.0
1,617,135	+		Rv1439c	0.41	-0.1
1,617,135	+		Rv1439c	0.41	-0.4
1,617,136	-		Rv1439c	0.41	-0.1
1,617,136	-		Rv1439c	0.41	+0.6
1,617,289	-		Rv1439c	0.77	+1.2
1,617,289	-		Rv1439c	0.77	-0.3
1,617,419	+				+0.1
1,617,419	+				-1.6
1,617,419	+				+1.0
1,617,426	+				+0.4
1,617,426	+				-0.5
1,617,426	+				-1.2
1,617,427	-				-0.1
1,617,427	-				-0.5
1,617,427	-				-1.1
1,617,427	-				+0.1
1,617,461	+				-0.0
1,617,467	+				-0.0
1,617,475	+				-0.6
1,617,476	-				-0.3
1,617,476	-				-0.7
1,617,509	+				-0.0
1,617,509	+				+1.1
1,617,509	+				+0.5
1,617,623	+				+0.3
1,617,693	+				-0.4
1,617,693	+				+0.1
1,617,694	-				+1.2
1,617,694	-				-1.7
1,617,783	+				+0.2
1,617,825	-				-1.0
1,617,825	-				-1.8
1,618,109	+				-0.3
1,618,124	+				-1.5
1,618,365	-		Rv1441c	0.11	-0.2