Experiment: 7H9 with Ofloxacin 0.8 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0209 and Rv0210 overlap by 4 nucleotides Rv0210 and Rv0211 are separated by 183 nucleotides
Rv0209: Rv0209 - Hypothetical protein, at 249,038 to 250,123
Rv0209
Rv0210: Rv0210 - Hypothetical protein, at 250,120 to 251,598
Rv0210
Rv0211: Rv0211 - Probable iron-regulated phosphoenolpyruvate carboxykinase [GTP] PckA (phosphoenolpyruvate carboxylase) (PEPCK)(pep carboxykinase), at 251,782 to 253,602
Rv0211
Position (kb) 250
251
252 Strain fitness (log2 ratio) -2
-1
0
1 at 249.282 kb on - strand, within Rv0209 at 249.436 kb on + strand, within Rv0209 at 249.437 kb on - strand, within Rv0209 at 249.437 kb on - strand, within Rv0209 at 249.619 kb on - strand, within Rv0209 at 249.924 kb on + strand, within Rv0209 at 249.925 kb on - strand, within Rv0209 at 249.925 kb on - strand, within Rv0209 at 250.004 kb on + strand, within Rv0209 at 250.005 kb on - strand, within Rv0209 at 250.303 kb on - strand, within Rv0210 at 250.303 kb on - strand, within Rv0210 at 250.440 kb on - strand, within Rv0210 at 250.488 kb on + strand, within Rv0210 at 250.488 kb on + strand, within Rv0210 at 250.489 kb on - strand, within Rv0210 at 250.489 kb on - strand, within Rv0210 at 250.846 kb on + strand, within Rv0210 at 251.400 kb on + strand, within Rv0210 at 251.401 kb on - strand, within Rv0210 at 251.690 kb on + strand at 251.730 kb on + strand at 251.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ofloxacin 0.8 ug/mL remove 249,282 - Rv0209 0.22 -1.6 249,436 + Rv0209 0.37 +1.7 249,437 - Rv0209 0.37 -1.4 249,437 - Rv0209 0.37 -0.2 249,619 - Rv0209 0.53 -1.9 249,924 + Rv0209 0.82 -1.1 249,925 - Rv0209 0.82 +0.2 249,925 - Rv0209 0.82 -0.5 250,004 + Rv0209 0.89 +0.2 250,005 - Rv0209 0.89 -1.8 250,303 - Rv0210 0.12 -0.4 250,303 - Rv0210 0.12 -0.6 250,440 - Rv0210 0.22 +0.4 250,488 + Rv0210 0.25 +0.2 250,488 + Rv0210 0.25 +0.1 250,489 - Rv0210 0.25 +1.1 250,489 - Rv0210 0.25 -1.5 250,846 + Rv0210 0.49 +1.3 251,400 + Rv0210 0.87 +0.6 251,401 - Rv0210 0.87 +1.3 251,690 + +0.5 251,730 + +0.3 251,734 + +0.8
Or see this region's nucleotide sequence