Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3886c

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
4,367,740	+		Rv3885c	0.52	-0.8
4,368,168	+		Rv3885c	0.78	-1.7
4,368,333	+		Rv3885c	0.88	-0.4
4,368,370	-				+0.2
4,368,415	-				-0.4
4,368,598	+				+1.0
4,368,695	-		Rv3886c	0.11	+1.0
4,368,852	+		Rv3886c	0.20	+0.2
4,368,853	-		Rv3886c	0.20	+0.9
4,368,887	-		Rv3886c	0.22	+0.9
4,368,887	-		Rv3886c	0.22	-0.0
4,369,053	+		Rv3886c	0.32	+2.4
4,369,054	-		Rv3886c	0.32	+1.1
4,369,131	+		Rv3886c	0.37	+1.0
4,369,131	+		Rv3886c	0.37	-1.5
4,369,132	-		Rv3886c	0.37	+1.1
4,369,132	-		Rv3886c	0.37	+0.0
4,369,213	-		Rv3886c	0.42	-1.3
4,369,724	+		Rv3886c	0.73	+1.8
4,369,812	+		Rv3886c	0.78	+0.0
4,370,204	-				-1.7
4,370,383	-		Rv3887c	0.15	-0.8
4,370,383	-		Rv3887c	0.15	-1.7
4,370,383	-		Rv3887c	0.15	-0.6
4,370,439	-		Rv3887c	0.19	-0.4
4,370,583	+		Rv3887c	0.28	-0.4
4,370,583	+		Rv3887c	0.28	+1.4
4,370,584	-		Rv3887c	0.28	-1.0
4,370,830	+		Rv3887c	0.44	-0.4
4,370,871	+		Rv3887c	0.47	-0.6
4,370,872	-		Rv3887c	0.47	-1.3