Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3742c

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
4,192,022	-		Rv3740c	0.88	+0.4
4,192,030	+		Rv3740c	0.89	+0.8
4,192,031	-		Rv3740c	0.89	-1.1
4,192,031	-		Rv3740c	0.89	+1.2
4,192,153	+				-1.1
4,192,153	+				-0.6
4,192,154	-				-0.1
4,192,245	-				-1.3
4,192,581	-		Rv3741c	0.60	+1.0
4,192,779	+		Rv3741c	0.89	-1.1
4,192,832	-				+2.4
4,192,849	-				-0.3
4,193,067	+		Rv3742c	0.55	+0.0
4,193,067	+		Rv3742c	0.55	-1.0
4,193,068	-		Rv3742c	0.55	-1.3
4,193,068	-		Rv3742c	0.55	+1.4
4,193,156	+		Rv3742c	0.77	+0.8
4,193,156	+		Rv3742c	0.77	-0.2
4,193,157	-		Rv3742c	0.78	+0.6
4,193,160	+		Rv3742c	0.78	-1.3
4,193,161	-		Rv3742c	0.79	+1.4
4,193,161	-		Rv3742c	0.79	-0.1
4,193,161	-		Rv3742c	0.79	+0.6
4,193,163	+		Rv3742c	0.79	-0.1
4,193,163	+		Rv3742c	0.79	+1.1
4,193,164	-		Rv3742c	0.79	-1.2
4,193,164	-		Rv3742c	0.79	-0.9
4,193,251	-				+0.2
4,193,251	-				+0.8
4,193,251	-				+0.5
4,193,251	-				-0.4
4,193,719	-		Rv3743c	0.17	+0.1
4,193,739	-		Rv3743c	0.18	+0.3
4,193,814	+		Rv3743c	0.21	+0.8
4,193,826	+		Rv3743c	0.22	-0.2
4,193,847	+		Rv3743c	0.23	-0.4
4,193,847	+		Rv3743c	0.23	+1.4
4,193,997	+		Rv3743c	0.31	+1.1
4,193,998	-		Rv3743c	0.31	+0.8