Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3572

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
4,012,615	-		Rv3571	0.18	+0.7
4,012,960	+		Rv3571	0.50	-0.3
4,012,961	-		Rv3571	0.51	+0.0
4,013,048	-		Rv3571	0.59	-0.4
4,013,386	-				+2.3
4,013,483	-				+0.1
4,013,560	+				+2.9
4,013,788	-		Rv3572	0.52	-0.5
4,013,862	+		Rv3572	0.66	+0.5
4,013,862	+		Rv3572	0.66	-0.3
4,013,863	-		Rv3572	0.66	-1.2
4,013,863	-		Rv3572	0.66	+0.9
4,013,889	+		Rv3572	0.71	-0.6
4,013,966	+		Rv3572	0.86	-0.7
4,013,966	+		Rv3572	0.86	+0.7
4,013,966	+		Rv3572	0.86	-0.8
4,013,966	+		Rv3572	0.86	-0.1
4,014,043	+				-0.5
4,014,642	+		Rv3573c	0.26	-0.2
4,014,643	-		Rv3573c	0.26	+1.6
4,014,643	-		Rv3573c	0.26	-0.6
4,014,647	-		Rv3573c	0.27	-0.8
4,014,647	-		Rv3573c	0.27	-0.6