Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2955c

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
3,306,584	-				-0.9
3,306,821	+		Rv2954c	0.21	-0.2
3,306,832	+		Rv2954c	0.23	+0.4
3,306,832	+		Rv2954c	0.23	-0.2
3,306,832	+		Rv2954c	0.23	-0.8
3,306,832	+		Rv2954c	0.23	+0.0
3,306,833	-		Rv2954c	0.23	-1.4
3,306,834	+		Rv2954c	0.23	-0.2
3,306,834	+		Rv2954c	0.23	-0.5
3,306,834	+		Rv2954c	0.23	-0.4
3,306,834	+		Rv2954c	0.23	+0.6
3,306,834	+		Rv2954c	0.23	-0.5
3,306,834	+		Rv2954c	0.23	+0.1
3,306,834	+		Rv2954c	0.23	+0.1
3,306,834	+		Rv2954c	0.23	+1.5
3,306,835	-		Rv2954c	0.23	+1.0
3,306,835	-		Rv2954c	0.23	-0.7
3,306,835	-		Rv2954c	0.23	-1.1
3,306,965	-		Rv2954c	0.41	-0.4
3,306,965	-		Rv2954c	0.41	+0.5
3,306,965	-		Rv2954c	0.41	-0.6
3,307,048	+		Rv2954c	0.53	+1.4
3,307,048	+		Rv2954c	0.53	-0.3
3,307,066	+		Rv2954c	0.55	+0.4
3,307,066	+		Rv2954c	0.55	-1.7
3,307,066	+		Rv2954c	0.55	-1.2
3,307,067	-		Rv2954c	0.55	-0.6
3,307,067	-		Rv2954c	0.55	+0.8
3,307,067	-		Rv2954c	0.55	-1.4
3,307,067	-		Rv2954c	0.55	+0.3
3,307,067	-		Rv2954c	0.55	-0.6
3,307,067	-		Rv2954c	0.55	+2.9
3,307,078	+		Rv2954c	0.57	-0.5
3,307,079	-		Rv2954c	0.57	+0.0
3,307,116	+		Rv2954c	0.62	+2.4
3,307,117	-		Rv2954c	0.62	+0.3
3,307,333	+				-0.1
3,307,581	+				-1.0
3,307,608	+				-0.5
3,307,609	-				-0.1
3,307,680	+		Rv2955c	0.10	+0.5
3,307,681	-		Rv2955c	0.10	+2.4
3,307,743	+		Rv2955c	0.17	-0.5
3,307,743	+		Rv2955c	0.17	+1.4
3,307,886	-		Rv2955c	0.32	+0.4
3,307,886	-		Rv2955c	0.32	-1.5
3,307,886	-		Rv2955c	0.32	+0.6
3,308,127	-		Rv2955c	0.57	-0.3
3,308,127	-		Rv2955c	0.57	+3.9
3,308,381	+		Rv2955c	0.83	+0.8
3,308,381	+		Rv2955c	0.83	+0.7
3,308,406	+		Rv2955c	0.86	+0.2
3,308,406	+		Rv2955c	0.86	-0.7
3,308,510	+				+1.5
3,308,649	-				-0.6
3,308,787	-		Rv2956	0.16	-0.4
3,308,824	+		Rv2956	0.21	+0.5
3,308,851	+		Rv2956	0.25	-1.5
3,308,851	+		Rv2956	0.25	-1.2