Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2951c

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
3,302,121	+		Rv2950c	0.82	-0.1
3,302,172	+		Rv2950c	0.85	+0.5
3,302,172	+		Rv2950c	0.85	+1.4
3,302,172	+		Rv2950c	0.85	-0.7
3,302,173	-		Rv2950c	0.85	+0.6
3,302,262	+		Rv2950c	0.90	-0.2
3,302,263	-		Rv2950c	0.90	-0.4
3,302,278	-				-0.9
3,302,296	-				+0.6
3,302,315	+				-0.5
3,302,316	-				+0.2
3,302,344	+				-0.6
3,302,344	+				+0.4
3,302,345	-				-0.4
3,302,471	-				-1.0
3,302,471	-				+0.4
3,302,471	-				-0.4
3,302,531	-				-1.6
3,302,539	+				+0.3
3,302,539	+				+0.2
3,302,539	+				-0.4
3,302,540	-				+1.4
3,302,540	-				+0.5
3,302,540	-				-0.9
3,302,540	-				-2.7
3,302,585	+				-0.6
3,302,585	+				-0.8
3,302,585	+				+0.6
3,302,586	-				-0.5
3,302,586	-				+0.5
3,302,592	+				-0.1
3,302,593	-				+2.4
3,302,613	+				-0.6
3,302,614	-				+1.2
3,302,698	-				+0.4
3,302,698	-				-0.9
3,302,698	-				-2.0
3,302,703	+				-0.8
3,302,704	-				+0.9
3,303,206	+				-0.2
3,303,236	-		Rv2951c	0.12	+1.9
3,303,285	+		Rv2951c	0.16	+2.2
3,303,286	-		Rv2951c	0.16	-0.3
3,303,311	+		Rv2951c	0.18	-0.6
3,303,312	-		Rv2951c	0.18	+0.8
3,303,422	-		Rv2951c	0.28	-0.1
3,303,422	-		Rv2951c	0.28	+0.5
3,303,584	+		Rv2951c	0.42	-0.2
3,303,585	-		Rv2951c	0.42	+1.0
3,303,585	-		Rv2951c	0.42	+0.4
3,303,698	+		Rv2951c	0.52	+0.6
3,303,723	+		Rv2951c	0.54	+0.9
3,303,724	-		Rv2951c	0.54	+0.1
3,303,724	-		Rv2951c	0.54	-0.2
3,303,738	-		Rv2951c	0.55	-0.2
3,303,756	+		Rv2951c	0.57	-1.9
3,303,757	-		Rv2951c	0.57	-0.3
3,303,757	-		Rv2951c	0.57	+2.4
3,303,757	-		Rv2951c	0.57	+0.4
3,304,136	+				+2.4
3,304,174	-				+0.8
3,304,174	-				-0.3
3,304,252	+				-1.4
3,304,253	-				-0.0
3,304,264	-				-0.4
3,304,266	+				-1.7
3,304,267	-				-0.7
3,304,291	-				+0.3
3,304,299	+				+1.4
3,304,300	-				-1.1
3,304,413	+				-0.5
3,304,413	+				+4.4
3,304,413	+				-0.4
3,304,413	+				-1.2
3,304,413	+				+2.4
3,304,413	+				-0.1
3,304,413	+				-0.6
3,304,414	-				-0.9
3,304,417	+				+0.1
3,304,417	+				+0.4
3,304,417	+				-0.2
3,304,417	+				-1.3
3,304,417	+				-1.4
3,304,417	+				-0.4
3,304,418	-				-0.4
3,304,418	-				-1.1
3,304,429	+				+0.1
3,304,486	-				+0.4
3,304,496	-				-1.1
3,304,496	-				+0.8
3,304,576	+		Rv2952	0.17	+0.2
3,304,576	+		Rv2952	0.17	+0.2
3,304,649	-		Rv2952	0.26	-0.8
3,304,649	-		Rv2952	0.26	+0.0
3,304,649	-		Rv2952	0.26	-0.3
3,304,760	-		Rv2952	0.39	+2.7
3,304,760	-		Rv2952	0.39	-2.2
3,304,760	-		Rv2952	0.39	-2.8
3,304,969	+		Rv2952	0.65	-0.0
3,304,969	+		Rv2952	0.65	-0.9
3,305,233	+				-1.0
3,305,233	+				+0.3
3,305,234	-				+0.0
3,305,234	-				+0.2