Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2797c

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
3,104,620	-		Rv2795c	0.70	+1.3
3,104,917	-				-1.0
3,104,917	-				+1.9
3,104,917	-				-0.6
3,104,973	+				-0.3
3,105,045	+				-0.4
3,105,046	-				-0.2
3,105,177	+		Rv2796c	0.21	+1.3
3,105,178	-		Rv2796c	0.22	+0.1
3,105,178	-		Rv2796c	0.22	+0.2
3,105,315	+		Rv2796c	0.46	+1.5
3,105,342	+		Rv2796c	0.51	-0.0
3,105,342	+		Rv2796c	0.51	-1.7
3,105,739	-				-1.2
3,105,739	-				-0.2
3,105,809	+		Rv2797c	0.11	-1.6
3,105,809	+		Rv2797c	0.11	-0.0
3,105,810	-		Rv2797c	0.11	-0.3
3,105,884	+		Rv2797c	0.16	+1.0
3,105,963	+		Rv2797c	0.20	-0.2
3,105,965	+		Rv2797c	0.20	-2.6
3,105,965	+		Rv2797c	0.20	-1.0
3,105,965	+		Rv2797c	0.20	-0.6
3,105,966	-		Rv2797c	0.21	+1.0
3,105,966	-		Rv2797c	0.21	-1.0
3,106,028	+		Rv2797c	0.24	-0.1
3,106,167	-		Rv2797c	0.32	-0.7
3,106,506	-		Rv2797c	0.53	-0.0
3,106,638	-		Rv2797c	0.60	-0.2
3,106,670	+		Rv2797c	0.62	+1.2
3,106,671	-		Rv2797c	0.62	-0.4
3,106,827	+		Rv2797c	0.72	+1.0
3,106,828	-		Rv2797c	0.72	-0.2
3,107,020	+		Rv2797c	0.83	-1.3
3,107,021	-		Rv2797c	0.83	+1.2
3,107,021	-		Rv2797c	0.83	+0.6
3,107,332	+				-0.9
3,107,543	+		Rv2798c	0.71	-2.1
3,107,544	-		Rv2798c	0.71	-0.8
3,107,674	+				+0.5
3,107,674	+				-0.7
3,107,675	-				-1.1
3,107,692	-				-0.2
3,107,727	+				-0.3
3,107,771	+				-2.4
3,107,771	+				-0.6
3,107,772	-				+1.3
3,107,772	-				-0.9
3,107,772	-				+0.1
3,108,106	+		Rv2799	0.54	-0.7
3,108,106	+		Rv2799	0.54	+0.3
3,108,107	-		Rv2799	0.54	-0.4
3,108,107	-		Rv2799	0.54	-1.3
3,108,111	-		Rv2799	0.54	-1.0
3,108,111	-		Rv2799	0.54	-1.4
3,108,111	-		Rv2799	0.54	-1.2
3,108,111	-		Rv2799	0.54	-2.2
3,108,111	-		Rv2799	0.54	+1.3
3,108,146	+		Rv2799	0.60	+2.3
3,108,146	+		Rv2799	0.60	-0.9
3,108,147	-		Rv2799	0.60	+1.1
3,108,147	-		Rv2799	0.60	-1.4
3,108,231	-		Rv2799	0.73	-1.0
3,108,231	-		Rv2799	0.73	-1.4
3,108,249	-		Rv2799	0.76	+0.7
3,108,282	-		Rv2799	0.82	-1.8