Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1910c

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
2,155,819	+		Rv1908c	0.87	+0.7
2,156,037	-				-0.3
2,156,088	-				-1.0
2,156,195	-		Rv1909c	0.10	+0.1
2,156,204	+		Rv1909c	0.12	-1.3
2,156,205	-		Rv1909c	0.13	-0.8
2,156,205	-		Rv1909c	0.13	+0.6
2,156,205	-		Rv1909c	0.13	-0.4
2,156,205	-		Rv1909c	0.13	-0.4
2,156,423	+		Rv1909c	0.62	+0.7
2,156,440	+		Rv1909c	0.66	+0.3
2,156,584	-				-0.1
2,156,595	+				+0.8
2,156,596	-				-0.2
2,156,602	+				-0.2
2,156,602	+				+3.3
2,156,602	+				+0.5
2,156,602	+				-0.8
2,156,602	+				-0.4
2,156,603	-				-1.1
2,156,603	-				-0.5
2,156,603	-				+0.4
2,156,603	-				-0.3
2,156,603	-				+0.7
2,156,716	+				-0.6
2,156,716	+				+2.3
2,156,716	+				+1.3
2,156,717	-				-0.5
2,156,876	-		Rv1910c	0.29	+0.7
2,156,983	+		Rv1910c	0.47	+1.7
2,156,983	+		Rv1910c	0.47	+0.2
2,156,984	-		Rv1910c	0.47	-0.3
2,157,063	-		Rv1910c	0.60	+1.3
2,157,082	+		Rv1910c	0.63	-0.4
2,157,082	+		Rv1910c	0.63	-0.0
2,157,082	+		Rv1910c	0.63	+2.3
2,157,135	+		Rv1910c	0.72	-1.0
2,157,162	-		Rv1910c	0.77	-0.1
2,157,162	-		Rv1910c	0.77	-0.3
2,157,555	-		Rv1911c	0.29	-0.5
2,157,663	-		Rv1911c	0.46	+0.6
2,157,663	-		Rv1911c	0.46	+0.8
2,157,878	+		Rv1911c	0.82	-1.7
2,157,878	+		Rv1911c	0.82	-0.5
2,157,959	-				-0.5
2,158,010	+				-0.5
2,158,010	+				+0.7
2,158,011	-				+2.3
2,158,013	+				+0.7