Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1628c

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
1,829,169	+		Rv1627c	0.25	+0.5
1,829,170	-		Rv1627c	0.25	-0.2
1,829,186	+		Rv1627c	0.27	-1.4
1,829,187	-		Rv1627c	0.27	-0.9
1,829,534	+		Rv1627c	0.55	-0.0
1,829,593	-		Rv1627c	0.60	+0.4
1,829,593	-		Rv1627c	0.60	-1.0
1,829,820	+		Rv1627c	0.79	-1.6
1,829,821	-		Rv1627c	0.79	-0.6
1,830,004	+				-1.3
1,830,005	-				-0.3
1,830,028	+				-2.4
1,830,045	+				+1.3
1,830,046	-				-0.8
1,830,046	-				+0.4
1,830,397	+		Rv1628c	0.66	+0.5
1,830,397	+		Rv1628c	0.66	+1.6
1,830,398	-		Rv1628c	0.67	-1.0
1,830,455	+		Rv1628c	0.78	-0.5
1,830,508	-		Rv1628c	0.89	-0.3
1,830,508	-		Rv1628c	0.89	+1.9
1,830,652	+				-0.4
1,830,653	-				-1.0