Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1608c

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
1,806,703	+		Rv1607	0.48	-0.4
1,806,703	+		Rv1607	0.48	+0.1
1,806,704	-		Rv1607	0.48	-2.3
1,807,033	+		Rv1607	0.79	+1.3
1,807,033	+		Rv1607	0.79	-0.3
1,807,033	+		Rv1607	0.79	+0.3
1,807,033	+		Rv1607	0.79	+0.3
1,807,034	-		Rv1607	0.79	-1.4
1,807,053	+		Rv1607	0.81	-1.2
1,807,237	+				-1.0
1,807,238	-				-0.4
1,807,387	+		Rv1608c	0.19	-0.1
1,807,387	+		Rv1608c	0.19	+0.2
1,807,388	-		Rv1608c	0.19	+2.8
1,807,388	-		Rv1608c	0.19	+1.9
1,807,388	-		Rv1608c	0.19	+2.3
1,807,656	+		Rv1608c	0.77	+2.9
1,807,656	+		Rv1608c	0.77	-0.4
1,807,774	+				+2.6
1,807,774	+				-0.9
1,807,775	-				-1.3