Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1422

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
1,596,105	+		Rv1421	0.14	-1.0
1,596,400	+		Rv1421	0.46	-0.4
1,596,710	-		Rv1421	0.81	+0.1
1,596,753	-		Rv1421	0.85	-2.7
1,596,783	-		Rv1421	0.89	+0.3
1,596,960	-				-0.3
1,597,485	+		Rv1422	0.59	+1.7
1,597,486	-		Rv1422	0.59	-0.0
1,597,770	+		Rv1422	0.86	+0.9
1,598,895	-				+3.0