Experiment: 7H9 with Ethionamide 0.1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0869c and Rv0870c overlap by 4 nucleotides Rv0870c and Rv0871 are separated by 164 nucleotides Rv0871 and Rv0872c are separated by 118 nucleotides
Rv0869c: Rv0869c - Probable molybdenum cofactor biosynthesis protein A2 MoaA2, at 966,265 to 967,347
Rv0869c
Rv0870c: Rv0870c - Possible conserved integral membrane protein, at 967,344 to 967,733
Rv0870c
Rv0871: Rv0871 - Probable cold shock-like protein B CspB, at 967,898 to 968,305
Rv0871
Rv0872c: Rv0872c - PE-PGRS family protein PE_PGRS15, at 968,424 to 970,244
Rv0872c
Position (kb) 967
968 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 966.673 kb on - strand, within Rv0869c at 966.717 kb on - strand, within Rv0869c at 966.871 kb on - strand, within Rv0869c at 966.871 kb on - strand, within Rv0869c at 966.898 kb on - strand, within Rv0869c at 967.008 kb on + strand, within Rv0869c at 967.008 kb on + strand, within Rv0869c at 967.008 kb on + strand, within Rv0869c at 967.009 kb on - strand, within Rv0869c at 967.009 kb on - strand, within Rv0869c at 967.009 kb on - strand, within Rv0869c at 967.109 kb on - strand, within Rv0869c at 967.109 kb on - strand, within Rv0869c at 967.184 kb on + strand, within Rv0869c at 967.184 kb on + strand, within Rv0869c at 967.185 kb on - strand, within Rv0869c at 967.276 kb on + strand at 967.431 kb on + strand, within Rv0870c at 967.673 kb on - strand, within Rv0870c at 967.673 kb on - strand, within Rv0870c at 967.713 kb on - strand at 967.748 kb on + strand at 967.773 kb on + strand at 967.774 kb on - strand at 967.806 kb on + strand at 967.807 kb on - strand at 967.923 kb on - strand at 967.923 kb on - strand at 967.977 kb on - strand, within Rv0871 at 967.977 kb on - strand, within Rv0871
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ethionamide 0.1 ug/mL remove 966,673 - Rv0869c 0.38 -0.4 966,717 - Rv0869c 0.42 -1.5 966,871 - Rv0869c 0.56 -0.5 966,871 - Rv0869c 0.56 -1.6 966,898 - Rv0869c 0.58 -3.4 967,008 + Rv0869c 0.69 -1.3 967,008 + Rv0869c 0.69 -0.5 967,008 + Rv0869c 0.69 -0.8 967,009 - Rv0869c 0.69 -0.6 967,009 - Rv0869c 0.69 +0.7 967,009 - Rv0869c 0.69 -1.0 967,109 - Rv0869c 0.78 -0.7 967,109 - Rv0869c 0.78 -0.8 967,184 + Rv0869c 0.85 -0.2 967,184 + Rv0869c 0.85 -0.6 967,185 - Rv0869c 0.85 +4.6 967,276 + +0.3 967,431 + Rv0870c 0.22 -1.5 967,673 - Rv0870c 0.84 -0.8 967,673 - Rv0870c 0.84 -0.9 967,713 - -0.6 967,748 + -1.2 967,773 + -0.8 967,774 - -0.5 967,806 + -0.4 967,807 - -0.6 967,923 - -1.7 967,923 - -0.9 967,977 - Rv0871 0.19 -1.2 967,977 - Rv0871 0.19 -2.6
Or see this region's nucleotide sequence