Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0400c

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
477,566	-		Rv0399c	0.19	+0.8
477,656	-		Rv0399c	0.27	+0.2
478,152	+		Rv0399c	0.67	-0.2
478,267	+		Rv0399c	0.76	+0.5
479,497	+		Rv0400c	0.78	+0.7
479,498	-		Rv0400c	0.78	-0.3
479,498	-		Rv0400c	0.78	+0.1
479,498	-		Rv0400c	0.78	+0.1
479,761	+				-0.1
480,314	+				-0.6
480,336	+				+2.3
480,498	-				+2.3
480,704	-		Rv0402c	0.12	+0.6