Experiment: 7H9 with Ethionamide 0.1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0080 and Rv0081 are separated by 94 nucleotides Rv0081 and Rv0082 are separated by 4 nucleotides Rv0082 and Rv0083 overlap by 4 nucleotides Rv0083 and Rv0084 are separated by 5 nucleotides Rv0084 and Rv0085 are separated by 10 nucleotides
Rv0080: Rv0080 - Conserved hypothetical protein, at 89,022 to 89,480
Rv0080
Rv0081: Rv0081 - Probable transcriptional regulatory protein, at 89,575 to 89,919
Rv0081
Rv0082: Rv0082 - Probable oxidoreductase, at 89,924 to 90,403
Rv0082
Rv0083: Rv0083 - Probable oxidoreductase, at 90,400 to 92,322
Rv0083
Rv0084: Rv0084 - Possible formate hydrogenlyase HycD (FHL), at 92,328 to 93,278
Rv0084
Rv0085: Rv0085 - Possible hydrogenase HycP, at 93,289 to 93,951
Rv0085
Position (kb) 90
91
92
93 Strain fitness (log2 ratio) -2
-1
0
1 at 89.471 kb on + strand at 89.472 kb on - strand at 89.593 kb on + strand at 89.594 kb on - strand at 89.747 kb on + strand, within Rv0081 at 89.917 kb on + strand at 90.015 kb on + strand, within Rv0082 at 90.101 kb on + strand, within Rv0082 at 90.290 kb on + strand, within Rv0082 at 90.322 kb on - strand, within Rv0082 at 90.497 kb on + strand at 90.497 kb on + strand at 90.607 kb on + strand, within Rv0083 at 90.607 kb on + strand, within Rv0083 at 90.608 kb on - strand, within Rv0083 at 90.608 kb on - strand, within Rv0083 at 90.608 kb on - strand, within Rv0083 at 90.619 kb on + strand, within Rv0083 at 90.620 kb on - strand, within Rv0083 at 90.811 kb on + strand, within Rv0083 at 90.811 kb on + strand, within Rv0083 at 90.935 kb on + strand, within Rv0083 at 91.072 kb on + strand, within Rv0083 at 92.134 kb on + strand at 92.134 kb on + strand at 92.134 kb on + strand at 92.135 kb on - strand at 92.135 kb on - strand at 92.136 kb on + strand at 92.137 kb on - strand at 92.137 kb on - strand at 92.196 kb on + strand at 92.973 kb on + strand, within Rv0084 at 92.973 kb on + strand, within Rv0084
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ethionamide 0.1 ug/mL remove 89,471 + -0.7 89,472 - -0.1 89,593 + -1.3 89,594 - -1.7 89,747 + Rv0081 0.50 -0.5 89,917 + +0.3 90,015 + Rv0082 0.19 +0.3 90,101 + Rv0082 0.37 +0.0 90,290 + Rv0082 0.76 -0.7 90,322 - Rv0082 0.83 -0.4 90,497 + -1.1 90,497 + -0.8 90,607 + Rv0083 0.11 -0.8 90,607 + Rv0083 0.11 -1.4 90,608 - Rv0083 0.11 -0.2 90,608 - Rv0083 0.11 -0.5 90,608 - Rv0083 0.11 -2.2 90,619 + Rv0083 0.11 -0.8 90,620 - Rv0083 0.11 -1.8 90,811 + Rv0083 0.21 +0.8 90,811 + Rv0083 0.21 -0.7 90,935 + Rv0083 0.28 -0.2 91,072 + Rv0083 0.35 -0.1 92,134 + -0.2 92,134 + -0.7 92,134 + -1.7 92,135 - -1.4 92,135 - -1.6 92,136 + -0.6 92,137 - -0.7 92,137 - -0.3 92,196 + +0.8 92,973 + Rv0084 0.68 -1.0 92,973 + Rv0084 0.68 +0.1
Or see this region's nucleotide sequence