Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3675

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
4,115,158	+				-1.1
4,115,159	-				+0.0
4,115,575	-		Rv3674c	0.57	-1.7
4,115,575	-		Rv3674c	0.57	-0.8
4,115,575	-		Rv3674c	0.57	-0.1
4,115,671	+		Rv3674c	0.70	-1.3
4,115,672	-		Rv3674c	0.70	-2.2
4,115,751	+		Rv3674c	0.80	-0.4
4,115,802	+		Rv3674c	0.87	-0.7
4,115,803	-		Rv3674c	0.88	-2.1
4,115,957	+				+0.8
4,115,958	-				-0.5
4,116,007	+				-0.6
4,116,008	-				-0.7
4,116,167	-		Rv3675	0.44	-0.1
4,116,167	-		Rv3675	0.44	-0.1
4,116,167	-		Rv3675	0.44	-1.5
4,116,167	-		Rv3675	0.44	-0.7
4,116,304	+		Rv3675	0.80	-1.3
4,116,405	+				+2.4
4,116,447	+				+0.1
4,117,184	+				-1.0
4,117,185	-				-1.1
4,117,185	-				+0.7
4,117,275	-				-0.2