Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3092c

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
3,459,816	-		Rv3091	0.41	-0.1
3,460,023	-		Rv3091	0.54	-0.5
3,460,806	-				-0.3
3,460,964	+		Rv3092c	0.16	-0.2
3,460,964	+		Rv3092c	0.16	-0.7
3,460,964	+		Rv3092c	0.16	-0.1
3,460,965	-		Rv3092c	0.16	+2.1
3,460,965	-		Rv3092c	0.16	-0.4
3,460,965	-		Rv3092c	0.16	-0.7
3,461,024	+		Rv3092c	0.23	-1.1
3,461,024	+		Rv3092c	0.23	-0.1
3,461,196	+		Rv3092c	0.41	+1.0
3,461,196	+		Rv3092c	0.41	+0.4
3,461,196	+		Rv3092c	0.41	+0.2
3,461,196	+		Rv3092c	0.41	+0.6
3,461,197	-		Rv3092c	0.42	-0.8
3,461,303	+		Rv3092c	0.53	+3.1
3,461,415	+		Rv3092c	0.65	+0.4
3,461,424	+		Rv3092c	0.66	+3.1
3,461,424	+		Rv3092c	0.66	+0.1
3,461,425	-		Rv3092c	0.66	-0.4
3,461,425	-		Rv3092c	0.66	-1.1
3,461,425	-		Rv3092c	0.66	-0.3
3,461,425	-		Rv3092c	0.66	-2.5
3,461,583	+		Rv3092c	0.83	-0.9
3,461,584	-		Rv3092c	0.84	-0.2
3,462,071	-		Rv3093c	0.31	+0.1
3,462,362	-		Rv3093c	0.60	+0.2
3,462,384	+		Rv3093c	0.62	-0.4
3,462,384	+		Rv3093c	0.62	-0.6
3,462,640	+		Rv3093c	0.88	+0.2
3,462,640	+		Rv3093c	0.88	-0.7
3,462,640	+		Rv3093c	0.88	-0.5
3,462,640	+		Rv3093c	0.88	-1.1
3,462,641	-		Rv3093c	0.88	-0.2