Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2623

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
2,948,635	+				-0.6
2,948,635	+				+5.2
2,948,635	+				-0.7
2,948,635	+				-1.2
2,948,635	+				-0.3
2,948,636	-				-0.3
2,948,873	+		Rv2622	0.29	+0.7
2,948,873	+		Rv2622	0.29	-0.5
2,949,277	-		Rv2622	0.78	-0.5
2,949,485	+				-0.6
2,949,623	-				-0.3
2,949,735	+		Rv2623	0.16	-0.4
2,950,080	+		Rv2623	0.54	-1.4
2,950,081	-		Rv2623	0.55	-0.2
2,950,081	-		Rv2623	0.55	-0.4
2,950,485	-				-0.6
2,950,661	+		Rv2624c	0.21	+2.1
2,951,141	+		Rv2624c	0.80	-1.5
2,951,263	-				-1.6