Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2041c

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
2,285,791	+		Rv2040c	0.18	+1.1
2,285,796	-		Rv2040c	0.19	+1.1
2,285,871	+		Rv2040c	0.27	+0.1
2,285,969	-		Rv2040c	0.38	-0.5
2,286,424	+		Rv2040c	0.88	-0.8
2,286,425	-		Rv2040c	0.88	+1.7
2,286,491	+				-3.0
2,286,491	+				+1.1
2,286,492	-				-0.0
2,286,711	-		Rv2041c	0.14	+0.6
2,286,889	+		Rv2041c	0.27	-0.6
2,287,095	+		Rv2041c	0.43	+1.1
2,287,172	+		Rv2041c	0.49	-1.8
2,287,173	-		Rv2041c	0.49	-1.2
2,287,324	+		Rv2041c	0.60	-0.5
2,287,410	+		Rv2041c	0.67	-0.1
2,287,644	-		Rv2041c	0.85	-1.5
2,287,874	-				-1.0
2,288,108	-		Rv2042c	0.28	+1.5
2,288,233	-		Rv2042c	0.44	+0.1
2,288,372	-		Rv2042c	0.61	+1.1
2,288,376	+		Rv2042c	0.62	+0.7
2,288,376	+		Rv2042c	0.62	+2.1
2,288,846	-		Rv2043c	0.29	-1.2