Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1328

Experiment: 7H9 with Ethionamide 0.1 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Ethionamide 0.1 ug/mL
1,494,439	-				-0.8
1,494,439	-				-0.1
1,494,483	+				-0.5
1,494,483	+				-0.6
1,494,484	-				+0.1
1,494,484	-				-0.5
1,494,487	-				+1.1
1,494,487	-				+0.1
1,494,550	+				-0.2
1,494,550	+				-0.3
1,494,555	+				-0.3
1,494,556	-				-0.3
1,494,635	+				-0.0
1,494,829	-		Rv1328	0.10	-1.5
1,494,907	-		Rv1328	0.13	-1.1
1,494,945	-		Rv1328	0.15	-1.6
1,495,032	+		Rv1328	0.18	+0.2
1,495,092	+		Rv1328	0.20	+0.5
1,495,093	-		Rv1328	0.20	-0.2
1,495,374	+		Rv1328	0.31	+1.1
1,495,375	-		Rv1328	0.31	-0.3
1,495,375	-		Rv1328	0.31	-1.9
1,495,590	+		Rv1328	0.40	+1.1
1,495,591	-		Rv1328	0.40	+0.1
1,496,319	+		Rv1328	0.68	+0.1
1,496,598	+		Rv1328	0.78	-1.1
1,496,652	-		Rv1328	0.81	-0.5
1,496,657	-		Rv1328	0.81	-0.4
1,496,657	-		Rv1328	0.81	-1.9
1,496,657	-		Rv1328	0.81	-1.8
1,496,719	-		Rv1328	0.83	+0.1
1,496,791	-		Rv1328	0.86	-1.6
1,496,861	+		Rv1328	0.89	-1.4
1,496,862	-		Rv1328	0.89	+2.1
1,496,978	-				-1.5
1,497,009	-				+2.1
1,497,082	-				-0.5
1,498,144	-		Rv1329c	0.48	-0.0