Experiment: 7H9 with Ethionamide 0.1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0574c and Rv0575c are separated by 184 nucleotides Rv0575c and Rv0576 are separated by 102 nucleotides
Rv0574c: Rv0574c - Conserved hypothetical protein, at 667,252 to 668,394
Rv0574c
Rv0575c: Rv0575c - Possible oxidoreductase, at 668,579 to 669,745
Rv0575c
Rv0576: Rv0576 - Probable transcriptional regulatory protein (possibly ArsR-family), at 669,848 to 671,152
Rv0576
Position (kb) 668
669
670 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 667.676 kb on + strand, within Rv0574c at 667.677 kb on - strand, within Rv0574c at 667.709 kb on - strand, within Rv0574c at 668.087 kb on + strand, within Rv0574c at 668.261 kb on + strand, within Rv0574c at 668.280 kb on + strand at 668.282 kb on + strand at 668.282 kb on + strand at 668.282 kb on + strand at 668.283 kb on - strand at 668.440 kb on - strand at 668.446 kb on + strand at 668.447 kb on - strand at 668.447 kb on - strand at 668.447 kb on - strand at 668.461 kb on - strand at 668.548 kb on + strand at 668.549 kb on - strand at 668.835 kb on + strand, within Rv0575c at 668.835 kb on + strand, within Rv0575c at 668.881 kb on - strand, within Rv0575c at 669.154 kb on - strand, within Rv0575c at 669.154 kb on - strand, within Rv0575c at 669.162 kb on + strand, within Rv0575c at 669.162 kb on + strand, within Rv0575c at 669.162 kb on + strand, within Rv0575c at 669.162 kb on + strand, within Rv0575c at 669.226 kb on - strand, within Rv0575c at 669.417 kb on + strand, within Rv0575c at 669.418 kb on - strand, within Rv0575c at 669.549 kb on + strand, within Rv0575c at 669.550 kb on - strand, within Rv0575c at 669.627 kb on + strand, within Rv0575c at 669.627 kb on + strand, within Rv0575c at 669.628 kb on - strand, within Rv0575c at 669.888 kb on + strand at 669.889 kb on - strand at 669.919 kb on + strand at 670.029 kb on - strand, within Rv0576 at 670.031 kb on + strand, within Rv0576 at 670.259 kb on - strand, within Rv0576 at 670.309 kb on + strand, within Rv0576 at 670.310 kb on - strand, within Rv0576
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ethionamide 0.1 ug/mL remove 667,676 + Rv0574c 0.37 +0.6 667,677 - Rv0574c 0.37 -0.6 667,709 - Rv0574c 0.40 -0.0 668,087 + Rv0574c 0.73 -0.3 668,261 + Rv0574c 0.88 +0.5 668,280 + -1.3 668,282 + -0.8 668,282 + +0.6 668,282 + +3.6 668,283 - -1.1 668,440 - -0.5 668,446 + -1.0 668,447 - +0.5 668,447 - -0.6 668,447 - -0.4 668,461 - -0.2 668,548 + +1.2 668,549 - -0.0 668,835 + Rv0575c 0.22 +1.2 668,835 + Rv0575c 0.22 +0.2 668,881 - Rv0575c 0.26 +0.5 669,154 - Rv0575c 0.49 -1.8 669,154 - Rv0575c 0.49 -0.8 669,162 + Rv0575c 0.50 +1.0 669,162 + Rv0575c 0.50 -0.3 669,162 + Rv0575c 0.50 -0.3 669,162 + Rv0575c 0.50 -1.8 669,226 - Rv0575c 0.55 +1.2 669,417 + Rv0575c 0.72 -0.0 669,418 - Rv0575c 0.72 +1.2 669,549 + Rv0575c 0.83 +0.8 669,550 - Rv0575c 0.83 -0.4 669,627 + Rv0575c 0.90 -1.0 669,627 + Rv0575c 0.90 +0.4 669,628 - Rv0575c 0.90 -0.7 669,888 + -0.3 669,889 - -1.0 669,919 + -0.3 670,029 - Rv0576 0.14 -0.2 670,031 + Rv0576 0.14 -0.4 670,259 - Rv0576 0.31 +0.0 670,309 + Rv0576 0.35 -0.7 670,310 - Rv0576 0.35 +0.2
Or see this region's nucleotide sequence