Experiment: 7H9 with Ethionamide 0.1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0211 and Rv0212c are separated by 66 nucleotides Rv0212c and Rv0213c overlap by 4 nucleotides
Rv0211: Rv0211 - Probable iron-regulated phosphoenolpyruvate carboxykinase [GTP] PckA (phosphoenolpyruvate carboxylase) (PEPCK)(pep carboxykinase), at 251,782 to 253,602
Rv0211
Rv0212c: Rv0212c - Possible transcriptional regulatory protein NadR (probably AsnC-family), at 253,669 to 254,640
Rv0212c
Rv0213c: Rv0213c - Possible methyltransferase (methylase), at 254,637 to 255,950
Rv0213c
Position (kb) 253
254
255 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 253.617 kb on + strand at 253.617 kb on + strand at 253.618 kb on - strand at 253.618 kb on - strand at 253.618 kb on - strand at 253.891 kb on + strand, within Rv0212c at 253.892 kb on - strand, within Rv0212c at 253.892 kb on - strand, within Rv0212c at 254.051 kb on - strand, within Rv0212c at 254.334 kb on - strand, within Rv0212c at 254.585 kb on + strand at 254.755 kb on - strand at 254.854 kb on + strand, within Rv0213c at 254.854 kb on + strand, within Rv0213c at 254.854 kb on + strand, within Rv0213c at 254.854 kb on + strand, within Rv0213c at 254.910 kb on - strand, within Rv0213c at 254.910 kb on - strand, within Rv0213c at 254.911 kb on + strand, within Rv0213c at 254.978 kb on + strand, within Rv0213c at 254.978 kb on + strand, within Rv0213c at 254.979 kb on - strand, within Rv0213c at 255.089 kb on - strand, within Rv0213c at 255.272 kb on + strand, within Rv0213c at 255.273 kb on - strand, within Rv0213c at 255.295 kb on - strand, within Rv0213c at 255.311 kb on - strand, within Rv0213c at 255.381 kb on + strand, within Rv0213c at 255.381 kb on + strand, within Rv0213c at 255.429 kb on - strand, within Rv0213c at 255.573 kb on + strand, within Rv0213c at 255.573 kb on + strand, within Rv0213c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Ethionamide 0.1 ug/mL remove 253,617 + +0.9 253,617 + +1.6 253,618 - -1.3 253,618 - -0.6 253,618 - +0.1 253,891 + Rv0212c 0.23 +0.7 253,892 - Rv0212c 0.23 -2.5 253,892 - Rv0212c 0.23 -0.7 254,051 - Rv0212c 0.39 -0.7 254,334 - Rv0212c 0.68 -1.6 254,585 + +1.0 254,755 - +0.9 254,854 + Rv0213c 0.17 +0.2 254,854 + Rv0213c 0.17 +0.1 254,854 + Rv0213c 0.17 -1.4 254,854 + Rv0213c 0.17 -0.2 254,910 - Rv0213c 0.21 -0.5 254,910 - Rv0213c 0.21 -0.7 254,911 + Rv0213c 0.21 -1.6 254,978 + Rv0213c 0.26 +1.4 254,978 + Rv0213c 0.26 -0.4 254,979 - Rv0213c 0.26 -0.2 255,089 - Rv0213c 0.34 -0.3 255,272 + Rv0213c 0.48 +0.8 255,273 - Rv0213c 0.48 -0.2 255,295 - Rv0213c 0.50 +0.1 255,311 - Rv0213c 0.51 +3.5 255,381 + Rv0213c 0.57 +0.5 255,381 + Rv0213c 0.57 +0.9 255,429 - Rv0213c 0.60 +0.1 255,573 + Rv0213c 0.71 +0.1 255,573 + Rv0213c 0.71 -0.2
Or see this region's nucleotide sequence