Experiment: 7H9 with Isoniazid 0.025 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2697c and Rv2698 are separated by 25 nucleotides Rv2698 and Rv2699c are separated by 4 nucleotides Rv2699c and Rv2700 are separated by 237 nucleotides Rv2700 and Rv2701c are separated by 9 nucleotides
Rv2697c: Rv2697c - Probable deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (dUTPase) (dUTP pyrophosphatase) (deoxyuridine 5'-triphosphatase) (dUTP diphosphatase) (deoxyuridine-triphosphatase), at 3,013,683 to 3,014,147
Rv2697c
Rv2698: Rv2698 - Probable conserved alanine rich transmembrane protein, at 3,014,173 to 3,014,658
Rv2698
Rv2699c: Rv2699c - Conserved hypothetical protein, at 3,014,663 to 3,014,965
Rv2699c
Rv2700: Rv2700 - Possible conserved secreted alanine rich protein, at 3,015,203 to 3,015,853
Rv2700
Rv2701c: Rv2701c - Inositol-1-monophosphatase SuhB, at 3,015,863 to 3,016,735
Rv2701c
Position (kb)
3014
3015 Strain fitness (log2 ratio)
-2
-1
0
1 at 3014.661 kb on + strand at 3014.661 kb on + strand at 3014.662 kb on - strand at 3015.073 kb on - strand at 3015.100 kb on - strand at 3015.100 kb on - strand at 3015.100 kb on - strand at 3015.135 kb on + strand at 3015.136 kb on - strand at 3015.136 kb on - strand at 3015.192 kb on - strand at 3015.899 kb on + strand at 3015.899 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Isoniazid 0.025 ug/mL remove 3,014,661 + -0.7 3,014,661 + -0.5 3,014,662 - -0.5 3,015,073 - -1.3 3,015,100 - -1.1 3,015,100 - +0.4 3,015,100 - -0.5 3,015,135 + -2.2 3,015,136 - -0.1 3,015,136 - -0.8 3,015,192 - -0.9 3,015,899 + -0.9 3,015,899 + -0.6
Or see this region's nucleotide sequence