Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0971c

Experiment: 7H9 with Isoniazid 0.025 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Isoniazid 0.025 ug/mL
1,080,817	+		Rv0969	0.90	+2.2
1,080,817	+		Rv0969	0.90	+0.1
1,080,818	-		Rv0969	0.90	-0.4
1,080,818	-		Rv0969	0.90	-0.1
1,080,885	+				+2.2
1,080,885	+				+0.2
1,080,886	-				+1.1
1,080,912	+				-1.7
1,080,912	+				+0.2
1,080,913	-				+0.7
1,081,022	-				-0.3
1,081,328	+		Rv0970	0.44	-0.5
1,081,335	-		Rv0970	0.45	+1.7
1,081,370	+		Rv0970	0.50	-0.0
1,081,370	+		Rv0970	0.50	-0.1
1,081,370	+		Rv0970	0.50	+0.7
1,081,371	-		Rv0970	0.50	-0.3
1,081,484	-		Rv0970	0.68	+0.2
1,081,620	+		Rv0970	0.90	+2.2
1,081,620	+		Rv0970	0.90	-0.6
1,081,620	+		Rv0970	0.90	-0.0
1,081,645	+				+0.0
1,081,755	+				+0.9
1,082,088	+		Rv0971c	0.39	-1.9
1,082,089	-		Rv0971c	0.39	-0.1
1,082,089	-		Rv0971c	0.39	+3.2
1,082,089	-		Rv0971c	0.39	+2.2
1,082,091	+		Rv0971c	0.39	-1.0
1,082,091	+		Rv0971c	0.39	+1.8
1,082,469	-		Rv0971c	0.86	+2.2
1,082,588	+				-0.4
1,082,777	+		Rv0972c	0.17	+0.9
1,082,777	+		Rv0972c	0.17	-0.3
1,082,778	-		Rv0972c	0.17	-0.3
1,083,205	+		Rv0972c	0.53	+0.6
1,083,543	-		Rv0972c	0.82	-0.8