Experiment: 7H9 with Isoniazid 0.025 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0876c and Rv0877 are separated by 137 nucleotides Rv0877 and Rv0878c are separated by 8 nucleotides
Rv0876c: Rv0876c - Possible conserved transmembrane protein, at 974,291 to 975,937
Rv0876c
Rv0877: Rv0877 - Conserved hypothetical protein, at 976,075 to 976,863
Rv0877
Rv0878c: Rv0878c - PPE family protein PPE13, at 976,872 to 978,203
Rv0878c
Position (kb) 976
977 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 975.746 kb on - strand, within Rv0876c at 975.850 kb on - strand at 975.850 kb on - strand at 975.850 kb on - strand at 975.850 kb on - strand at 975.850 kb on - strand at 975.871 kb on - strand at 975.871 kb on - strand at 975.871 kb on - strand at 976.045 kb on - strand at 976.045 kb on - strand at 976.058 kb on + strand at 976.214 kb on - strand, within Rv0877 at 976.315 kb on + strand, within Rv0877 at 976.316 kb on - strand, within Rv0877 at 976.369 kb on - strand, within Rv0877 at 976.369 kb on - strand, within Rv0877 at 976.603 kb on + strand, within Rv0877 at 976.603 kb on + strand, within Rv0877 at 976.603 kb on + strand, within Rv0877 at 976.604 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.621 kb on - strand, within Rv0877 at 976.703 kb on + strand, within Rv0877 at 976.703 kb on + strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.704 kb on - strand, within Rv0877 at 976.751 kb on - strand, within Rv0877 at 976.807 kb on + strand at 976.808 kb on - strand at 976.816 kb on + strand at 976.817 kb on - strand at 976.817 kb on - strand at 976.861 kb on + strand at 976.861 kb on + strand at 976.862 kb on - strand at 976.862 kb on - strand at 976.932 kb on + strand at 976.933 kb on - strand at 976.933 kb on - strand at 976.933 kb on - strand at 976.942 kb on - strand at 976.945 kb on + strand at 977.005 kb on - strand at 977.052 kb on + strand, within Rv0878c at 977.084 kb on + strand, within Rv0878c at 977.085 kb on - strand, within Rv0878c at 977.085 kb on - strand, within Rv0878c at 977.148 kb on - strand, within Rv0878c at 977.148 kb on - strand, within Rv0878c at 977.148 kb on - strand, within Rv0878c at 977.288 kb on + strand, within Rv0878c at 977.495 kb on + strand, within Rv0878c at 977.515 kb on + strand, within Rv0878c at 977.515 kb on + strand, within Rv0878c at 977.515 kb on + strand, within Rv0878c at 977.734 kb on + strand, within Rv0878c at 977.777 kb on - strand, within Rv0878c at 977.777 kb on - strand, within Rv0878c at 977.777 kb on - strand, within Rv0878c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Isoniazid 0.025 ug/mL remove 975,746 - Rv0876c 0.88 -1.9 975,850 - -0.6 975,850 - -1.2 975,850 - -0.5 975,850 - +0.3 975,850 - -0.8 975,871 - +0.5 975,871 - -0.2 975,871 - -0.6 976,045 - +1.3 976,045 - +1.7 976,058 + -0.5 976,214 - Rv0877 0.18 +2.5 976,315 + Rv0877 0.30 +2.0 976,316 - Rv0877 0.31 +2.4 976,369 - Rv0877 0.37 +2.2 976,369 - Rv0877 0.37 +2.6 976,603 + Rv0877 0.67 +2.4 976,603 + Rv0877 0.67 +3.6 976,603 + Rv0877 0.67 +2.8 976,604 - Rv0877 0.67 +2.8 976,621 - Rv0877 0.69 +2.5 976,621 - Rv0877 0.69 +3.3 976,621 - Rv0877 0.69 +2.2 976,621 - Rv0877 0.69 +3.4 976,621 - Rv0877 0.69 +2.5 976,703 + Rv0877 0.80 +2.5 976,703 + Rv0877 0.80 +2.4 976,704 - Rv0877 0.80 +3.3 976,704 - Rv0877 0.80 -0.1 976,704 - Rv0877 0.80 +4.4 976,704 - Rv0877 0.80 +2.0 976,704 - Rv0877 0.80 +3.0 976,751 - Rv0877 0.86 +3.3 976,807 + +2.9 976,808 - +0.5 976,816 + +0.7 976,817 - -0.0 976,817 - +1.3 976,861 + -0.8 976,861 + -1.1 976,862 - -0.6 976,862 - +0.9 976,932 + +0.1 976,933 - +0.7 976,933 - +0.7 976,933 - -0.4 976,942 - -0.3 976,945 + +0.9 977,005 - -1.9 977,052 + Rv0878c 0.14 -0.8 977,084 + Rv0878c 0.16 -0.6 977,085 - Rv0878c 0.16 +0.9 977,085 - Rv0878c 0.16 -0.3 977,148 - Rv0878c 0.21 -1.3 977,148 - Rv0878c 0.21 -1.1 977,148 - Rv0878c 0.21 -1.2 977,288 + Rv0878c 0.31 +0.7 977,495 + Rv0878c 0.47 +0.9 977,515 + Rv0878c 0.48 +0.0 977,515 + Rv0878c 0.48 -0.1 977,515 + Rv0878c 0.48 -0.5 977,734 + Rv0878c 0.65 -1.4 977,777 - Rv0878c 0.68 +0.5 977,777 - Rv0878c 0.68 +0.3 977,777 - Rv0878c 0.68 -0.6
Or see this region's nucleotide sequence