Experiment: 7H9 with Isoniazid 0.025 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0261c and Rv0262c are separated by 140 nucleotides Rv0262c and Rv0263c are separated by 9 nucleotides Rv0263c and Rv0264c are separated by 16 nucleotides
Rv0261c: Rv0261c - Probable integral membrane nitrite extrusion protein NarK3 (nitrite facilitator), at 312,759 to 314,168
Rv0261c
Rv0262c: Rv0262c - Aminoglycoside 2'-N-acetyltransferase Aac (Aac(2')-IC), at 314,309 to 314,854
Rv0262c
Rv0263c: Rv0263c - Conserved hypothetical protein, at 314,864 to 315,766
Rv0263c
Rv0264c: Rv0264c - Conserved hypothetical protein, at 315,783 to 316,415
Rv0264c
Position (kb) 314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 313.451 kb on - strand, within Rv0261c at 313.541 kb on - strand, within Rv0261c at 313.582 kb on + strand, within Rv0261c at 313.583 kb on - strand, within Rv0261c at 313.585 kb on - strand, within Rv0261c at 313.585 kb on - strand, within Rv0261c at 313.918 kb on + strand, within Rv0261c at 314.169 kb on - strand at 314.179 kb on - strand at 314.310 kb on + strand at 314.478 kb on + strand, within Rv0262c at 314.523 kb on + strand, within Rv0262c at 314.617 kb on - strand, within Rv0262c at 314.617 kb on - strand, within Rv0262c at 314.643 kb on + strand, within Rv0262c at 314.880 kb on - strand at 314.997 kb on + strand, within Rv0263c at 315.117 kb on - strand, within Rv0263c at 315.178 kb on + strand, within Rv0263c at 315.178 kb on + strand, within Rv0263c at 315.424 kb on - strand, within Rv0263c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Isoniazid 0.025 ug/mL remove 313,451 - Rv0261c 0.49 -0.5 313,541 - Rv0261c 0.55 -0.4 313,582 + Rv0261c 0.58 -0.6 313,583 - Rv0261c 0.58 -0.2 313,585 - Rv0261c 0.59 -0.8 313,585 - Rv0261c 0.59 +0.8 313,918 + Rv0261c 0.82 -1.7 314,169 - -0.2 314,179 - -2.3 314,310 + +1.1 314,478 + Rv0262c 0.31 -0.7 314,523 + Rv0262c 0.39 -0.3 314,617 - Rv0262c 0.56 -0.7 314,617 - Rv0262c 0.56 -0.7 314,643 + Rv0262c 0.61 -0.0 314,880 - -0.9 314,997 + Rv0263c 0.15 +2.3 315,117 - Rv0263c 0.28 +0.1 315,178 + Rv0263c 0.35 -0.1 315,178 + Rv0263c 0.35 +0.1 315,424 - Rv0263c 0.62 -3.6
Or see this region's nucleotide sequence