Experiment: 7H9 with Isoniazid 0.025 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0072 and Rv0073 are separated by 2 nucleotides Rv0073 and Rv0074 are separated by 79 nucleotides
Rv0072: Rv0072 - Probable glutamine-transport transmembrane protein ABC transporter, at 80,624 to 81,673
Rv0072
Rv0073: Rv0073 - Probable glutamine-transport ATP-binding protein ABC transporter, at 81,676 to 82,668
Rv0073
Rv0074: Rv0074 - Conserved protein, at 82,748 to 83,983
Rv0074
Position (kb) 81
82
83 Strain fitness (log2 ratio) -2
-1
0
1
2 at 81.166 kb on - strand, within Rv0072 at 81.179 kb on + strand, within Rv0072 at 81.180 kb on - strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.217 kb on - strand, within Rv0072 at 81.217 kb on - strand, within Rv0072 at 81.217 kb on - strand, within Rv0072 at 81.217 kb on - strand, within Rv0072 at 81.220 kb on + strand, within Rv0072 at 81.221 kb on - strand, within Rv0072 at 81.221 kb on - strand, within Rv0072 at 81.374 kb on + strand, within Rv0072 at 81.374 kb on + strand, within Rv0072 at 81.374 kb on + strand, within Rv0072 at 81.396 kb on + strand, within Rv0072 at 81.396 kb on + strand, within Rv0072 at 81.396 kb on + strand, within Rv0072 at 81.396 kb on + strand, within Rv0072 at 81.445 kb on + strand, within Rv0072 at 81.462 kb on + strand, within Rv0072 at 81.567 kb on - strand, within Rv0072 at 81.567 kb on - strand, within Rv0072 at 81.567 kb on - strand, within Rv0072 at 81.715 kb on + strand at 81.716 kb on - strand at 81.716 kb on - strand at 81.716 kb on - strand at 81.716 kb on - strand at 81.727 kb on + strand at 81.735 kb on + strand at 81.896 kb on + strand, within Rv0073 at 81.896 kb on + strand, within Rv0073 at 81.897 kb on - strand, within Rv0073 at 81.897 kb on - strand, within Rv0073 at 81.927 kb on + strand, within Rv0073 at 81.927 kb on + strand, within Rv0073 at 81.928 kb on - strand, within Rv0073 at 81.928 kb on - strand, within Rv0073 at 82.004 kb on + strand, within Rv0073 at 82.005 kb on - strand, within Rv0073 at 82.362 kb on - strand, within Rv0073 at 82.417 kb on + strand, within Rv0073 at 82.505 kb on - strand, within Rv0073 at 82.585 kb on + strand at 82.586 kb on - strand at 82.587 kb on + strand at 82.588 kb on - strand at 82.588 kb on - strand at 82.666 kb on + strand at 82.687 kb on - strand at 83.114 kb on + strand, within Rv0074 at 83.114 kb on + strand, within Rv0074 at 83.114 kb on + strand, within Rv0074 at 83.115 kb on - strand, within Rv0074 at 83.141 kb on + strand, within Rv0074 at 83.403 kb on + strand, within Rv0074 at 83.403 kb on + strand, within Rv0074 at 83.403 kb on + strand, within Rv0074 at 83.404 kb on - strand, within Rv0074 at 83.409 kb on + strand, within Rv0074 at 83.409 kb on + strand, within Rv0074 at 83.585 kb on + strand, within Rv0074 at 83.586 kb on - strand, within Rv0074
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Isoniazid 0.025 ug/mL remove 81,166 - Rv0072 0.52 -0.8 81,179 + Rv0072 0.53 -1.3 81,180 - Rv0072 0.53 -1.1 81,216 + Rv0072 0.56 +0.3 81,216 + Rv0072 0.56 -0.5 81,216 + Rv0072 0.56 +1.1 81,216 + Rv0072 0.56 +2.3 81,216 + Rv0072 0.56 +2.3 81,216 + Rv0072 0.56 +1.2 81,216 + Rv0072 0.56 +0.8 81,216 + Rv0072 0.56 +2.3 81,217 - Rv0072 0.56 -0.5 81,217 - Rv0072 0.56 +0.5 81,217 - Rv0072 0.56 -0.3 81,217 - Rv0072 0.56 +0.4 81,220 + Rv0072 0.57 -1.0 81,221 - Rv0072 0.57 -1.4 81,221 - Rv0072 0.57 -0.9 81,374 + Rv0072 0.71 -0.3 81,374 + Rv0072 0.71 -0.4 81,374 + Rv0072 0.71 -0.4 81,396 + Rv0072 0.74 -1.7 81,396 + Rv0072 0.74 -0.3 81,396 + Rv0072 0.74 +0.5 81,396 + Rv0072 0.74 -0.7 81,445 + Rv0072 0.78 -0.7 81,462 + Rv0072 0.80 -0.3 81,567 - Rv0072 0.90 +0.4 81,567 - Rv0072 0.90 -1.7 81,567 - Rv0072 0.90 +0.0 81,715 + -1.4 81,716 - -1.2 81,716 - +1.6 81,716 - -1.8 81,716 - -0.4 81,727 + +0.1 81,735 + -0.5 81,896 + Rv0073 0.22 -1.0 81,896 + Rv0073 0.22 +0.7 81,897 - Rv0073 0.22 -1.2 81,897 - Rv0073 0.22 -0.8 81,927 + Rv0073 0.25 -1.8 81,927 + Rv0073 0.25 +0.3 81,928 - Rv0073 0.25 +0.2 81,928 - Rv0073 0.25 +0.0 82,004 + Rv0073 0.33 -0.4 82,005 - Rv0073 0.33 -0.3 82,362 - Rv0073 0.69 -0.3 82,417 + Rv0073 0.75 -0.6 82,505 - Rv0073 0.83 -1.1 82,585 + -0.7 82,586 - -0.5 82,587 + -1.8 82,588 - -0.2 82,588 - +1.3 82,666 + -0.9 82,687 - -0.5 83,114 + Rv0074 0.30 +1.6 83,114 + Rv0074 0.30 -0.1 83,114 + Rv0074 0.30 -0.6 83,115 - Rv0074 0.30 -0.1 83,141 + Rv0074 0.32 -0.7 83,403 + Rv0074 0.53 -0.4 83,403 + Rv0074 0.53 -1.2 83,403 + Rv0074 0.53 +1.0 83,404 - Rv0074 0.53 -0.7 83,409 + Rv0074 0.53 -1.8 83,409 + Rv0074 0.53 +2.0 83,585 + Rv0074 0.68 -0.3 83,586 - Rv0074 0.68 -1.0
Or see this region's nucleotide sequence