Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3238c

Experiment: 7H9 with Isoniazid 0.025 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Isoniazid 0.025 ug/mL
3,612,741	-		Rv3236c	0.68	-0.6
3,613,288	+		Rv3237c	0.35	-0.4
3,613,289	-		Rv3237c	0.35	-1.4
3,613,319	-		Rv3237c	0.41	-0.2
3,613,319	-		Rv3237c	0.41	-0.3
3,613,486	-		Rv3237c	0.76	-0.9
3,613,546	-		Rv3237c	0.88	-0.9
3,613,561	-				-0.4
3,613,603	+				+0.8
3,613,603	+				-0.2
3,613,603	+				-0.9
3,613,603	+				+1.3
3,613,636	+				-0.5
3,613,636	+				-0.1
3,613,669	+				-1.1
3,613,669	+				+0.2
3,613,670	-				-0.6
3,613,745	+		Rv3238c	0.11	-1.2
3,613,745	+		Rv3238c	0.11	-0.4
3,613,783	-		Rv3238c	0.16	-0.2
3,613,921	-		Rv3238c	0.35	-0.0
3,613,944	+		Rv3238c	0.38	-0.2
3,613,944	+		Rv3238c	0.38	+1.3
3,613,945	-		Rv3238c	0.38	-0.9
3,613,945	-		Rv3238c	0.38	-1.2
3,613,955	+		Rv3238c	0.40	-1.6
3,613,956	-		Rv3238c	0.40	+0.0
3,614,101	-		Rv3238c	0.59	-0.9
3,614,101	-		Rv3238c	0.59	-0.5
3,614,132	+		Rv3238c	0.64	+0.3
3,614,132	+		Rv3238c	0.64	-0.4
3,614,132	+		Rv3238c	0.64	+0.5
3,614,133	-		Rv3238c	0.64	-2.1
3,614,133	-		Rv3238c	0.64	+0.3
3,614,133	-		Rv3238c	0.64	-0.1
3,614,133	-		Rv3238c	0.64	-2.0
3,614,136	+		Rv3238c	0.64	-0.9
3,614,136	+		Rv3238c	0.64	-1.0
3,614,136	+		Rv3238c	0.64	-0.9
3,614,136	+		Rv3238c	0.64	-0.3
3,614,137	-		Rv3238c	0.64	+2.4
3,614,137	-		Rv3238c	0.64	+0.2
3,614,137	-		Rv3238c	0.64	-1.5
3,614,137	-		Rv3238c	0.64	-0.6
3,614,137	-		Rv3238c	0.64	-2.5
3,614,137	-		Rv3238c	0.64	-0.6
3,614,137	-		Rv3238c	0.64	-1.3
3,614,137	-		Rv3238c	0.64	-0.3
3,614,209	+		Rv3238c	0.74	-0.4
3,614,209	+		Rv3238c	0.74	-0.2
3,614,210	-		Rv3238c	0.74	-1.7
3,614,288	+		Rv3238c	0.85	+0.0
3,614,306	+		Rv3238c	0.87	-0.5
3,614,306	+		Rv3238c	0.87	-0.4
3,614,307	-		Rv3238c	0.87	-0.3
3,614,352	-				-2.2
3,614,352	-				-1.5
3,614,358	+				-2.4
3,614,359	-				-3.0
3,614,359	-				+1.1
3,614,715	+				-0.0
3,614,716	-				+0.5
3,614,716	-				-0.8
3,614,781	+		Rv3239c	0.10	-2.6
3,614,816	-		Rv3239c	0.11	+0.2
3,614,830	+		Rv3239c	0.12	+0.8
3,614,830	+		Rv3239c	0.12	+0.1
3,614,831	-		Rv3239c	0.12	+0.2
3,614,831	-		Rv3239c	0.12	-0.7
3,614,831	-		Rv3239c	0.12	-0.7
3,614,979	+		Rv3239c	0.17	-1.0
3,614,980	-		Rv3239c	0.17	-0.6
3,614,983	-		Rv3239c	0.17	-0.4
3,615,032	-		Rv3239c	0.18	+1.8
3,615,061	+		Rv3239c	0.19	-0.4
3,615,067	+		Rv3239c	0.19	-1.8
3,615,067	+		Rv3239c	0.19	+0.8
3,615,067	+		Rv3239c	0.19	-0.5
3,615,068	-		Rv3239c	0.19	-0.8
3,615,073	+		Rv3239c	0.20	-1.2
3,615,234	+		Rv3239c	0.25	+0.5