Experiment: 7H9 with Isoniazid 0.025 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0651 and Rv0652 are separated by 36 nucleotides Rv0652 and Rv0653c overlap by 8 nucleotides Rv0653c and Rv0654 are separated by 70 nucleotides
Rv0651: Rv0651 - 50S ribosomal protein L10 RplJ, at 748,276 to 748,812
Rv0651
Rv0652: Rv0652 - 50S ribosomal protein L7/L12 RplL (SA1), at 748,849 to 749,241
Rv0652
Rv0653c: Rv0653c - Possible transcriptional regulatory protein (probably TetR-family), at 749,234 to 749,929
Rv0653c
Rv0654: Rv0654 - Probable dioxygenase, at 750,000 to 751,505
Rv0654
Position (kb) 749
750 Strain fitness (log2 ratio) -2
-1
0
1 at 749.239 kb on + strand at 749.240 kb on - strand at 749.447 kb on + strand, within Rv0653c at 749.447 kb on + strand, within Rv0653c at 749.447 kb on + strand, within Rv0653c at 749.448 kb on - strand, within Rv0653c at 749.448 kb on - strand, within Rv0653c at 749.634 kb on + strand, within Rv0653c at 749.634 kb on + strand, within Rv0653c at 749.635 kb on - strand, within Rv0653c at 749.744 kb on + strand, within Rv0653c at 749.744 kb on + strand, within Rv0653c at 749.800 kb on - strand, within Rv0653c at 750.073 kb on + strand at 750.073 kb on + strand at 750.073 kb on + strand at 750.074 kb on - strand at 750.074 kb on - strand at 750.130 kb on - strand at 750.130 kb on - strand at 750.138 kb on - strand at 750.177 kb on + strand, within Rv0654 at 750.177 kb on + strand, within Rv0654 at 750.178 kb on - strand, within Rv0654 at 750.408 kb on + strand, within Rv0654 at 750.409 kb on - strand, within Rv0654 at 750.409 kb on - strand, within Rv0654 at 750.475 kb on - strand, within Rv0654 at 750.528 kb on + strand, within Rv0654 at 750.529 kb on - strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.654 kb on + strand, within Rv0654 at 750.655 kb on - strand, within Rv0654 at 750.655 kb on - strand, within Rv0654 at 750.667 kb on - strand, within Rv0654 at 750.838 kb on - strand, within Rv0654
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Isoniazid 0.025 ug/mL remove 749,239 + +0.7 749,240 - +0.7 749,447 + Rv0653c 0.31 -2.1 749,447 + Rv0653c 0.31 -1.4 749,447 + Rv0653c 0.31 -2.1 749,448 - Rv0653c 0.31 -0.6 749,448 - Rv0653c 0.31 +0.7 749,634 + Rv0653c 0.57 -0.2 749,634 + Rv0653c 0.57 -1.5 749,635 - Rv0653c 0.58 +0.3 749,744 + Rv0653c 0.73 -0.4 749,744 + Rv0653c 0.73 -0.1 749,800 - Rv0653c 0.81 -0.9 750,073 + +0.2 750,073 + -0.2 750,073 + -1.7 750,074 - -0.5 750,074 - +1.4 750,130 - -1.1 750,130 - -0.9 750,138 - -0.9 750,177 + Rv0654 0.12 +0.5 750,177 + Rv0654 0.12 +0.9 750,178 - Rv0654 0.12 -1.4 750,408 + Rv0654 0.27 +1.0 750,409 - Rv0654 0.27 -1.1 750,409 - Rv0654 0.27 -0.7 750,475 - Rv0654 0.32 -1.2 750,528 + Rv0654 0.35 -0.4 750,529 - Rv0654 0.35 +1.2 750,654 + Rv0654 0.43 -1.2 750,654 + Rv0654 0.43 -0.7 750,654 + Rv0654 0.43 -0.7 750,654 + Rv0654 0.43 -0.6 750,654 + Rv0654 0.43 +0.6 750,655 - Rv0654 0.43 -0.5 750,655 - Rv0654 0.43 -0.8 750,667 - Rv0654 0.44 -0.7 750,838 - Rv0654 0.56 -0.4
Or see this region's nucleotide sequence