Experiment: 7H9 with Isoniazid 0.025 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0490 and Rv0491 are separated by 227 nucleotides Rv0491 and Rv0492c overlap by 4 nucleotides
Rv0490: Rv0490 - Putative two component sensor histidine kinase SenX3, at 579,349 to 580,581
Rv0490
Rv0491: Rv0491 - Two component sensory transduction protein RegX3 (transcriptional regulatory protein) (probably LuxR-family), at 580,809 to 581,492
Rv0491
Rv0492c: Rv0492c - Probable oxidoreductase GMC-type, at 581,489 to 583,378
Rv0492c
Position (kb) 580
581
582 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 580.033 kb on - strand, within Rv0490 at 580.411 kb on - strand, within Rv0490 at 580.496 kb on - strand at 580.996 kb on + strand, within Rv0491 at 580.996 kb on + strand, within Rv0491 at 580.996 kb on + strand, within Rv0491 at 580.996 kb on + strand, within Rv0491 at 580.996 kb on + strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 580.997 kb on - strand, within Rv0491 at 581.100 kb on + strand, within Rv0491 at 581.368 kb on - strand, within Rv0491 at 581.475 kb on + strand at 581.528 kb on + strand at 581.852 kb on + strand, within Rv0492c at 581.852 kb on + strand, within Rv0492c at 581.876 kb on + strand, within Rv0492c at 581.876 kb on + strand, within Rv0492c at 581.877 kb on - strand, within Rv0492c at 581.877 kb on - strand, within Rv0492c at 581.877 kb on - strand, within Rv0492c at 581.883 kb on + strand, within Rv0492c at 581.884 kb on - strand, within Rv0492c at 582.152 kb on - strand, within Rv0492c at 582.312 kb on + strand, within Rv0492c at 582.312 kb on + strand, within Rv0492c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Isoniazid 0.025 ug/mL remove 580,033 - Rv0490 0.55 -0.5 580,411 - Rv0490 0.86 +0.7 580,496 - -0.5 580,996 + Rv0491 0.27 -3.7 580,996 + Rv0491 0.27 +1.8 580,996 + Rv0491 0.27 -0.2 580,996 + Rv0491 0.27 -0.4 580,996 + Rv0491 0.27 +1.8 580,997 - Rv0491 0.27 -1.6 580,997 - Rv0491 0.27 -1.1 580,997 - Rv0491 0.27 -2.1 580,997 - Rv0491 0.27 -1.7 580,997 - Rv0491 0.27 -1.1 581,100 + Rv0491 0.43 +0.0 581,368 - Rv0491 0.82 -0.5 581,475 + -1.0 581,528 + -0.1 581,852 + Rv0492c 0.19 -0.9 581,852 + Rv0492c 0.19 -0.7 581,876 + Rv0492c 0.20 +0.8 581,876 + Rv0492c 0.20 -1.1 581,877 - Rv0492c 0.21 -0.3 581,877 - Rv0492c 0.21 +0.2 581,877 - Rv0492c 0.21 +0.2 581,883 + Rv0492c 0.21 -0.3 581,884 - Rv0492c 0.21 -0.5 582,152 - Rv0492c 0.35 -0.1 582,312 + Rv0492c 0.44 -2.2 582,312 + Rv0492c 0.44 -1.0
Or see this region's nucleotide sequence