Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3480c

Experiment: 7H9 with Levofloxacin 0.3 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Levofloxacin 0.3 ug/mL
3,898,269	+		Rv3479	0.80	+0.8
3,898,438	-		Rv3479	0.85	-0.7
3,898,545	+		Rv3479	0.89	-0.6
3,898,731	+				-0.1
3,899,042	+				+0.9
3,899,252	+		Rv3480c	0.23	-1.4
3,899,617	+		Rv3480c	0.47	-0.6
3,899,618	-		Rv3480c	0.47	-3.1
3,899,741	-		Rv3480c	0.56	-0.7
3,899,824	+		Rv3480c	0.61	-0.9
3,899,824	+		Rv3480c	0.61	-0.8
3,899,991	-		Rv3480c	0.72	-0.8
3,900,143	+		Rv3480c	0.83	-0.2
3,900,143	+		Rv3480c	0.83	-3.0
3,900,191	+		Rv3480c	0.86	+1.0
3,900,194	-		Rv3480c	0.86	-0.5
3,900,453	-				-0.7
3,900,457	-				-1.8
3,900,457	-				+0.2
3,900,461	+				-0.2
3,900,462	-				+0.7
3,900,516	-				+2.0
3,900,526	+				+0.4
3,900,588	+		Rv3481c	0.14	+1.2
3,901,066	+		Rv3481c	0.83	-0.2
3,901,259	+				-0.3
3,901,290	+				-1.2
3,901,291	-				-0.0