Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3293

Experiment: 7H9 with Levofloxacin 0.3 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Levofloxacin 0.3 ug/mL
3,672,756	-		Rv3292	0.34	+2.7
3,672,969	+		Rv3292	0.51	-1.1
3,673,026	-		Rv3292	0.56	-1.0
3,673,261	+		Rv3292	0.75	-1.5
3,673,261	+		Rv3292	0.75	-1.9
3,673,355	-		Rv3292	0.82	+0.1
3,673,355	-		Rv3292	0.82	+0.6
3,673,355	-		Rv3292	0.82	-1.2
3,673,355	-		Rv3292	0.82	-1.2
3,673,357	+		Rv3292	0.82	-1.5
3,673,357	+		Rv3292	0.82	-0.2
3,673,357	+		Rv3292	0.82	-0.4
3,673,543	+				-2.4
3,673,543	+				-0.8
3,673,543	+				-1.0
3,673,591	+				-0.2
3,673,631	-				-0.4
3,673,766	+		Rv3293	0.11	+2.1
3,673,766	+		Rv3293	0.11	-0.8
3,673,767	-		Rv3293	0.11	-0.1
3,673,877	-		Rv3293	0.19	-1.3
3,673,877	-		Rv3293	0.19	-1.1
3,674,694	+		Rv3293	0.74	+3.8
3,674,697	+		Rv3293	0.74	-1.1
3,674,697	+		Rv3293	0.74	-1.2
3,674,698	-		Rv3293	0.74	-0.2
3,674,698	-		Rv3293	0.74	-3.1
3,674,698	-		Rv3293	0.74	-0.4
3,674,772	+		Rv3293	0.79	-0.9
3,674,784	+		Rv3293	0.80	+0.1
3,674,784	+		Rv3293	0.80	-0.3
3,675,043	-				-0.7
3,675,187	+				-0.6
3,675,187	+				-1.7
3,675,336	-		Rv3294c	0.19	-0.1
3,675,408	+		Rv3294c	0.27	+0.4
3,675,408	+		Rv3294c	0.27	-0.5
3,675,408	+		Rv3294c	0.27	-2.0
3,675,408	+		Rv3294c	0.27	+0.7
3,675,652	-		Rv3294c	0.58	+1.3
3,675,667	+		Rv3294c	0.59	+0.2
3,675,704	+		Rv3294c	0.64	-0.3
3,675,705	-		Rv3294c	0.64	+0.4
3,675,709	-		Rv3294c	0.65	-0.4
3,675,709	-		Rv3294c	0.65	-0.1
3,675,709	-		Rv3294c	0.65	-0.9
3,675,728	+		Rv3294c	0.67	+0.7
3,675,729	-		Rv3294c	0.67	-0.8
3,675,732	+		Rv3294c	0.67	+2.1
3,675,746	+		Rv3294c	0.69	-1.1
3,675,771	+		Rv3294c	0.72	-0.5
3,675,771	+		Rv3294c	0.72	-0.1
3,675,772	-		Rv3294c	0.72	-1.7
3,675,772	-		Rv3294c	0.72	-0.0
3,675,860	+		Rv3294c	0.83	-0.8
3,675,905	+		Rv3294c	0.89	-0.7
3,675,905	+		Rv3294c	0.89	+0.2
3,675,906	-		Rv3294c	0.89	+0.8
3,675,926	-				-0.1
3,675,947	-				+0.1
3,676,046	-				-0.0
3,676,053	+				-0.0
3,676,053	+				-0.7
3,676,054	-				-0.1
3,676,054	-				-0.0
3,676,056	+				+1.5
3,676,057	-				+0.8