Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2949c

Experiment: 7H9 with Levofloxacin 0.3 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Levofloxacin 0.3 ug/mL
3,299,070	-		Rv2948c	0.58	-2.0
3,299,365	+		Rv2948c	0.72	+0.1
3,299,378	+		Rv2948c	0.73	+1.5
3,299,382	+		Rv2948c	0.73	+0.4
3,299,417	+		Rv2948c	0.75	-1.0
3,299,426	+		Rv2948c	0.75	-0.1
3,299,426	+		Rv2948c	0.75	-1.0
3,299,427	-		Rv2948c	0.75	-0.5
3,299,427	-		Rv2948c	0.75	-0.0
3,299,427	-		Rv2948c	0.75	-0.1
3,299,489	+		Rv2948c	0.78	+0.6
3,299,498	+		Rv2948c	0.78	+0.1
3,299,498	+		Rv2948c	0.78	-0.2
3,299,498	+		Rv2948c	0.78	-0.5
3,299,498	+		Rv2948c	0.78	-0.4
3,299,498	+		Rv2948c	0.78	-1.3
3,299,499	-		Rv2948c	0.78	+0.3
3,299,499	-		Rv2948c	0.78	+3.2
3,299,499	-		Rv2948c	0.78	-1.1
3,299,500	+		Rv2948c	0.79	-1.5
3,299,500	+		Rv2948c	0.79	-1.4
3,299,500	+		Rv2948c	0.79	-0.3
3,299,500	+		Rv2948c	0.79	-1.4
3,299,500	+		Rv2948c	0.79	-0.8
3,299,500	+		Rv2948c	0.79	-0.5
3,299,501	-		Rv2948c	0.79	+2.2
3,299,501	-		Rv2948c	0.79	-0.6
3,299,501	-		Rv2948c	0.79	-1.4
3,299,501	-		Rv2948c	0.79	+1.6
3,299,501	-		Rv2948c	0.79	+1.2
3,299,504	+		Rv2948c	0.79	-0.9
3,299,504	+		Rv2948c	0.79	+0.4
3,299,504	+		Rv2948c	0.79	-0.6
3,299,505	-		Rv2948c	0.79	-1.5
3,299,505	-		Rv2948c	0.79	-0.3
3,299,505	-		Rv2948c	0.79	+0.2
3,299,509	+		Rv2948c	0.79	-0.0
3,299,509	+		Rv2948c	0.79	-0.8
3,299,509	+		Rv2948c	0.79	+1.2
3,299,509	+		Rv2948c	0.79	-0.3
3,299,510	-		Rv2948c	0.79	-1.0
3,299,510	-		Rv2948c	0.79	+2.2
3,299,539	+		Rv2948c	0.80	-0.7
3,299,539	+		Rv2948c	0.80	-0.2
3,299,742	+		Rv2948c	0.90	+1.5
3,299,742	+		Rv2948c	0.90	-0.2
3,299,878	+				-0.1
3,299,878	+				-0.7
3,299,879	-				-0.6
3,299,896	+				+0.2
3,299,896	+				+0.8
3,299,897	-				+1.4
3,299,957	-				+0.1
3,300,138	-		Rv2949c	0.28	-2.0
3,300,262	+		Rv2949c	0.48	-0.2
3,300,339	+		Rv2949c	0.61	-2.2
3,300,344	-		Rv2949c	0.62	+2.2
3,300,586	-				-0.2
3,300,688	+				+0.7
3,300,743	+				+0.8
3,300,924	+		Rv2950c	0.18	+1.2
3,301,215	+		Rv2950c	0.33	-0.8
3,301,215	+		Rv2950c	0.33	-1.4
3,301,215	+		Rv2950c	0.33	-2.1
3,301,215	+		Rv2950c	0.33	-2.0
3,301,216	-		Rv2950c	0.33	-0.4
3,301,216	-		Rv2950c	0.33	-0.3
3,301,284	+		Rv2950c	0.37	+1.1
3,301,285	-		Rv2950c	0.37	-1.6
3,301,285	-		Rv2950c	0.37	-0.4
3,301,335	+		Rv2950c	0.40	-0.1
3,301,336	-		Rv2950c	0.40	-0.9
3,301,360	-		Rv2950c	0.41	-1.0
3,301,437	-		Rv2950c	0.45	-0.5