Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2865

Experiment: 7H9 with Levofloxacin 0.3 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Levofloxacin 0.3 ug/mL
3,176,757	+		Rv2864c	0.72	+0.6
3,176,763	+		Rv2864c	0.72	-1.4
3,176,763	+		Rv2864c	0.72	+0.5
3,176,763	+		Rv2864c	0.72	-1.0
3,176,763	+		Rv2864c	0.72	+0.4
3,176,764	-		Rv2864c	0.72	-0.3
3,176,940	+		Rv2864c	0.82	-0.4
3,176,941	-		Rv2864c	0.82	-0.7
3,176,992	+		Rv2864c	0.85	+0.2
3,177,327	+				-0.3
3,177,338	+				-1.3
3,177,339	-				-0.4
3,177,339	-				+0.5
3,177,516	-				-1.4
3,177,528	+				+0.3
3,177,528	+				-0.0
3,177,693	+		Rv2865	0.55	-1.0
3,177,694	-		Rv2865	0.56	-1.7
3,177,765	+		Rv2865	0.81	+1.2
3,177,828	+				-1.7
3,177,828	+				-0.5
3,177,828	+				+3.2
3,177,829	-				-1.0
3,177,829	-				-0.4
3,178,000	-		Rv2866	0.67	+1.2
3,178,000	-		Rv2866	0.67	+0.3
3,178,012	-		Rv2866	0.72	-1.5
3,178,039	+		Rv2866	0.82	-1.1
3,178,039	+		Rv2866	0.82	+1.5
3,178,040	-		Rv2866	0.83	+0.5
3,178,075	-				+0.6
3,178,075	-				-1.5
3,178,083	+				+0.6
3,178,184	+				+1.7
3,178,219	-				-1.1
3,178,328	+				-0.4
3,178,329	-				-0.4
3,178,329	-				-0.5
3,178,334	+				-0.1
3,178,335	-				-0.9
3,178,378	+				+0.4
3,178,379	-				+1.9
3,178,440	-				-0.6
3,178,497	-				+0.1
3,178,549	+		Rv2867c	0.11	-1.7
3,178,549	+		Rv2867c	0.11	-0.1
3,178,550	-		Rv2867c	0.11	+1.3
3,178,550	-		Rv2867c	0.11	-0.9