Experiment: 7H9 with Levofloxacin 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2320c and Rv2321c are separated by 0 nucleotides Rv2321c and Rv2322c overlap by 1 nucleotides Rv2322c and Rv2323c overlap by 4 nucleotides
Rv2320c: Rv2320c - Probable cationic amino acid transport integral membrane protein RocE, at 2,592,723 to 2,594,153
Rv2320c
Rv2321c: Rv2321c - Probable ornithine aminotransferase (C-terminus part) RocD2 (ornithine--oxo-acid aminotransferase), at 2,594,154 to 2,594,699
Rv2321c
Rv2322c: Rv2322c - Probable ornithine aminotransferase (N-terminus part) RocD1 (ornithine--oxo-acid aminotransferase), at 2,594,699 to 2,595,364
Rv2322c
Rv2323c: Rv2323c - Conserved protein, at 2,595,361 to 2,596,269
Rv2323c
Position (kb)
2594
2595 Strain fitness (log2 ratio)
-2
-1
0
1 at 2593.154 kb on - strand, within Rv2320c at 2593.154 kb on - strand, within Rv2320c at 2593.154 kb on - strand, within Rv2320c at 2593.154 kb on - strand, within Rv2320c at 2593.327 kb on + strand, within Rv2320c at 2593.328 kb on - strand, within Rv2320c at 2593.328 kb on - strand, within Rv2320c at 2593.432 kb on + strand, within Rv2320c at 2593.433 kb on - strand, within Rv2320c at 2593.433 kb on - strand, within Rv2320c at 2593.627 kb on - strand, within Rv2320c at 2593.696 kb on - strand, within Rv2320c at 2593.744 kb on + strand, within Rv2320c at 2593.744 kb on + strand, within Rv2320c at 2594.008 kb on - strand, within Rv2320c at 2594.155 kb on + strand at 2594.156 kb on - strand at 2594.257 kb on + strand, within Rv2321c at 2595.229 kb on - strand, within Rv2322c at 2595.603 kb on + strand, within Rv2323c at 2595.621 kb on - strand, within Rv2323c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Levofloxacin 0.3 ug/mL remove 2,593,154 - Rv2320c 0.30 -1.1 2,593,154 - Rv2320c 0.30 +1.1 2,593,154 - Rv2320c 0.30 -0.9 2,593,154 - Rv2320c 0.30 -0.5 2,593,327 + Rv2320c 0.42 -1.0 2,593,328 - Rv2320c 0.42 -2.6 2,593,328 - Rv2320c 0.42 -0.3 2,593,432 + Rv2320c 0.50 +0.6 2,593,433 - Rv2320c 0.50 -0.4 2,593,433 - Rv2320c 0.50 -0.6 2,593,627 - Rv2320c 0.63 -1.3 2,593,696 - Rv2320c 0.68 +0.4 2,593,744 + Rv2320c 0.71 -0.4 2,593,744 + Rv2320c 0.71 +0.7 2,594,008 - Rv2320c 0.90 +0.3 2,594,155 + -1.5 2,594,156 - -0.2 2,594,257 + Rv2321c 0.19 +0.0 2,595,229 - Rv2322c 0.80 -1.0 2,595,603 + Rv2323c 0.27 -0.6 2,595,621 - Rv2323c 0.29 -0.8
Or see this region's nucleotide sequence