Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1939

Experiment: 7H9 with Levofloxacin 0.3 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Levofloxacin 0.3 ug/mL
2,191,238	-		Rv1938	0.20	+1.4
2,191,597	+		Rv1938	0.53	-1.5
2,191,597	+		Rv1938	0.53	+0.8
2,191,708	-		Rv1938	0.64	-0.6
2,191,927	+		Rv1938	0.84	-0.9
2,192,372	+		Rv1939	0.54	-1.2
2,192,372	+		Rv1939	0.54	-2.3
2,192,373	-		Rv1939	0.54	-0.6
2,192,700	-				+1.7
2,193,465	-		Rv1940	0.81	-0.2
2,193,465	-		Rv1940	0.81	-0.7
2,193,465	-		Rv1940	0.81	-0.6
2,193,575	+				-0.2
2,193,575	+				-1.1
2,193,575	+				+0.0
2,193,575	+				-0.6
2,193,576	-				+0.1
2,193,576	-				+0.4
2,193,576	-				-0.6