Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1869c

Experiment: 7H9 with Levofloxacin 0.3 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Levofloxacin 0.3 ug/mL
2,118,463	-		Rv1868	0.53	-0.9
2,118,664	+		Rv1868	0.63	+0.8
2,118,784	-		Rv1868	0.68	-1.5
2,118,827	+		Rv1868	0.70	-1.0
2,119,286	+				-1.4
2,119,689	+		Rv1869c	0.19	-0.1
2,119,690	-		Rv1869c	0.19	+0.8
2,119,707	+		Rv1869c	0.20	+0.3
2,119,726	-		Rv1869c	0.22	-0.1
2,119,740	+		Rv1869c	0.23	+0.2
2,119,740	+		Rv1869c	0.23	-0.8
2,119,832	+		Rv1869c	0.30	-0.9
2,119,869	+		Rv1869c	0.33	-0.0
2,119,869	+		Rv1869c	0.33	+2.4
2,119,869	+		Rv1869c	0.33	-1.4
2,119,870	-		Rv1869c	0.33	-0.8
2,120,081	+		Rv1869c	0.50	+0.3
2,120,082	-		Rv1869c	0.50	-0.0
2,120,082	-		Rv1869c	0.50	+1.1
2,120,106	-		Rv1869c	0.52	+1.8
2,120,339	+		Rv1869c	0.71	-0.4
2,120,388	+		Rv1869c	0.75	-1.4
2,120,696	-				+0.2
2,120,696	-				-0.3
2,120,696	-				-0.5
2,120,696	-				+2.4
2,120,796	+				-0.2
2,120,811	-				-0.8
2,120,920	-		Rv1870c	0.20	+2.4
2,121,008	-		Rv1870c	0.33	+2.4
2,121,008	-		Rv1870c	0.33	-0.2
2,121,070	-		Rv1870c	0.43	+1.3
2,121,127	-		Rv1870c	0.52	-0.2
2,121,136	-		Rv1870c	0.54	-1.6
2,121,136	-		Rv1870c	0.54	+1.1
2,121,342	+		Rv1870c	0.86	+0.1
2,121,342	+		Rv1870c	0.86	-0.1
2,121,342	+		Rv1870c	0.86	+0.1
2,121,343	-		Rv1870c	0.86	-0.2
2,121,343	-		Rv1870c	0.86	-0.7
2,121,361	+		Rv1870c	0.89	-0.4
2,121,361	+		Rv1870c	0.89	-0.1
2,121,362	-		Rv1870c	0.89	-1.3
2,121,410	-				+2.4
2,121,439	+				-2.4
2,121,439	+				-0.3
2,121,469	+				+0.4
2,121,544	-		Rv1871c	0.13	+0.3
2,121,568	-		Rv1871c	0.19	-0.3
2,121,610	+		Rv1871c	0.29	-0.5
2,121,611	-		Rv1871c	0.30	-1.8
2,121,676	+		Rv1871c	0.46	+1.4
2,121,676	+		Rv1871c	0.46	-0.5
2,121,676	+		Rv1871c	0.46	+0.6
2,121,676	+		Rv1871c	0.46	+0.6
2,121,682	+		Rv1871c	0.48	+0.6
2,121,682	+		Rv1871c	0.48	+1.4
2,121,683	-		Rv1871c	0.48	+3.0